Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2000 ATGGCTTCAATTATTTTTCTCTTGATGGTGTTACTCACAATGTTTTCCTCTGCTTATGGCTATGGTGGAGGATGGGTTAATGCACATGCAACCTTCTATGGAGGAAGTGATGCATCAGGAACAATGGGTGGGGCATGTGGATATGGTAACCTTTACAGTCAAGGGTATGGAACAAACACTGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGTTTAAGCTGTGGTTCTTGTTTTGAGATTATGTGTGTTGGTGACCGTAAATGGTGTCTTCCTGGTTCTATTTTGGTTACTGCTACTAATTTCTGTCCACCAAACAATGCCTTACCTAATAATAATGGTGGGTGGTGTAACCCTCCTTTGCATCACTTTGATCTTGCTCAACCTGTTTTTCTGAGAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGAATTAGGTTCACAATCAATGGACATTCCTACTTCAATTTAGTTCTAGTAACAAACGTGGGAGGTGCTGGAGATGTACATTCAGTGGCTATTAAAGGATCAAGAACAGGGTGGATGCCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACAATTACCTTAATGGCCAAACCCTATCTTTCAAGGTCACAACAAGTGATGGCAAAACAGTAATTTCCAACAATGTTGCCCCTGCTGGTTGGTCCTTTGGTCAAACCTACACTGGTGCTCAATTCCGCTAG 747 0.4244 MASIIFLLMVLLTMFSSAYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIMCVGDRKWCLPGSILVTATNFCPPNNALPNNNGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQTLSFKVTTSDGKTVISNNVAPAGWSFGQTYTGAQFR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2000 248 Gene3D - 11 151 IPR036908 -
Tpr2g2000 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Tpr2g2000 248 Gene3D - 155 247 IPR036749 -
Tpr2g2000 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Tpr2g2000 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Tpr2g2000 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Tpr2g2000 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Tpr2g2000 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Tpr2g2000 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Tpr2g2000 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Tpr2g2000 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Tpr2g2000 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Tpr2g2000 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Tpr2g2000 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Tpr2g2000 248 PANTHER EXPANSIN-A10 8 248 - -
Tpr2g2000 248 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Tpr2g2000 248 SMART dpbb_1 60 145 IPR007112 -
Tpr2g2000 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Tpr2g2000 248 SUPERFAMILY Barwin-like endoglucanases 9 173 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2000 Tpr-Chr2 23869791 23872231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2000 1 248 Expansin Gene Family AT2G03090 82.258 7.09e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2000 - - gmx:100796316 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2000 2 23869791 23872231 Tpr2g2000 2 23869791 23872231 ECH
Tpr2g2000 2 23869791 23872231 Tpr3g4411 3 49180476 49183014 ECH
Tpr2g2000 2 23869791 23872231 Tpr6g3151 6 34022002 34024097 ECH