Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1999 ATGGGGAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACAAATGGAAGACAAGCAACCTATGCAAAAAGGAAGAATGGAATAATGAAGAAAGCTAGTGAATTATCTATATTGTGTGATATAGATATTATACTTCTCATGTTCTCTCCTGGTGGAAAACCTTCATTATGCACAGGGAGACGCAACAACTTTGAGGATGTGATTTCAAAGTTTGCTCAACTAACCTCACAAGAAAGGGCAAAGAGGAAATTGGAGAGTCTTGAAGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGAACATACAAGACTTTTATGGTACAAGTAGTCAAACTGTTGAGGATTTGAATGATCAAGCTAAGCTATTACATAACCGTATCTCCGAAATACACGAGCGACTAAGCCATTGGAGTGACATTGAAAAAATTAGCAGTGTGGATGAATTGGGACAGATGGAAAATTCACTCAAAGAGTCTCTTAATCAAATTAATACACACAAGGAAAATGTACAAAAGCAACAATTGGTATCACTGCAATGCAATAATCAGTTCAATGAAATGCATGTTCCCTACAAAATGAATCCTCAACAGCATCTACAATCTCTATCATGGATTGTTAATGGTGACAGCCAGAGTATAGTACTACCTGAAGACTCAAGCTTGCTTCTCCCCAAAGATGTAGAAGGCTCAACAAGCTCATCATTTGGAAGCTATGCAAGTTATCTTGGCTCAAACACAAAACCAAACATTTCAAATTCAGCACAAGAAAATTGTGTCCTTAGTGACATGAGCAATAATGTTACTAATGCTCCTGTTAGACTACAGTTTAATGGACAATTTCCATACATACCAAACAATTTCAACATAATGAATGATATGAAACTCCAAACACCTCCACCAATGAATAATAATCCACATGAAAATCAAGTAGATCATAACTATCATGTCAATGGAAACTTTGAAGCACCTAAACAAGTGTTTGATCAATCTAACCACCATGGTTGGACTACTAATTCAGGTCCTTGTGCTGTTAATATCTTTGATGAACATTTGTATCCACAGCCAAATTTTCCACAAGTGCATTTTGGCTTCACATAG 1101 0.3624 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRNNFEDVISKFAQLTSQERAKRKLESLEALKKTFKKLDHDVNIQDFYGTSSQTVEDLNDQAKLLHNRISEIHERLSHWSDIEKISSVDELGQMENSLKESLNQINTHKENVQKQQLVSLQCNNQFNEMHVPYKMNPQQHLQSLSWIVNGDSQSIVLPEDSSLLLPKDVEGSTSSSFGSYASYLGSNTKPNISNSAQENCVLSDMSNNVTNAPVRLQFNGQFPYIPNNFNIMNDMKLQTPPPMNNNPHENQVDHNYHVNGNFEAPKQVFDQSNHHGWTTNSGPCAVNIFDEHLYPQPNFPQVHFGFT* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1999 366 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr2g1999 366 Coils Coil 77 97 - -
Tpr2g1999 366 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g1999 366 Coils Coil 150 170 - -
Tpr2g1999 366 Coils Coil 114 134 - -
Tpr2g1999 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Tpr2g1999 366 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tpr2g1999 366 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Tpr2g1999 366 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Tpr2g1999 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 356 - -
Tpr2g1999 366 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 356 - -
Tpr2g1999 366 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g1999 366 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g1999 366 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1999 Tpr-Chr2 23859339 23863473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1999 1 359 Type I MADS-box Gene Family AT2G03060 47.244 2.38e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g1999 SRF-TF 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1999 - - lang:109356063 521.931