Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1996 ATGAATATCTCTTCACAAGAAAACCAAAATAATAATTCTTTTATTTACCCTTTTTCATCTTCTCATTCTTCTTCTATGCAAATGGTATATTCAGACCTTGGATCTCTCTCTCTTAGTTCAACTTCAAACTATGGTGGTGTAGTTTCTTCAAGTTCATCAAGATGGAGTAATTCTTTTCCATTTATGAGAGAGTCGTTTGTTTCTAAAGGATTTGAAGAAGAAGAACAAAAAATGGATGATGATGATATTATGGAAGGAAAAGGTTCTTATTGTAGTGAGGATGGAGAAAATAGTGAGAAAACAAATCATGATATTATTAACTTCAATGATGAGTTAGAGAACCCTAATGGAAGTGGTAAAGAAGAAGATAATGGACAGTCTAGTAAATGTGCTAGAGGACATTGGAGACCTGCTGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAATTGGAATCTCATAGCTGAAAATTTGGAAGGAAGATCTGGCAAGAGTTGTAGGCTAAGATGGTTCAATCAATTGGATCCAAGAATCAATAGAAGAGCATTCAATGAAGAAGAGGAAGAAAGACTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCCATGATAGCAAGACTATTCCCAGGAAGAACAGACAATGCTGTAAAGAATCATTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCCAGTGCATACAGGAGAAGAAGATTAAGCCAAAATGTTTACAGAAGAATGGATCAAAATCCAAGCTTTATCTGCAAAGACACTAACACCACAACAATGGAAACAGAATCATCAACACCTTATTTTCTAAATGGAGCCCCACTTGGAAATAGTATGTCCATTTTCCCATATGCTACTTCTTTCCAACATGGTGTTCATGGTGGTGGGGTTGATTATGGTTTAAATGTTTTACCTCACATGAGTGGTGAGAGAGAAGCTATGAAAGGACCCCTACATGTTGGTCTCTATGCTCAACAAGCACCATTTGATTTCTTCTCTGGTGGTAGAAATAATGGCATGGTGATGAAAGAGTCTTTCAATCATAACAATTATTGGGATGGAACAAATGATGAATATCAACAACATCAACAACTATCTAGTTTCTACCATCATTATCCTCAACAACAATATCTTATGTCAATGCAACAACAAAACAATCACAATTTTTACAATTTCTCAAATTCATCAGCATCATCAACACATCATCATCATCATAATGGAGAAAACAGTGAAAAAGTTGTAATTGGTGACACCCCAGATGCAGTTCAAACTCCTCCTCAATTTTTTGACTTCCTTGGAGTAGGTGCTACATGA 1341 0.3565 MNISSQENQNNNSFIYPFSSSHSSSMQMVYSDLGSLSLSSTSNYGGVVSSSSSRWSNSFPFMRESFVSKGFEEEEQKMDDDDIMEGKGSYCSEDGENSEKTNHDIINFNDELENPNGSGKEEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFNEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQNVYRRMDQNPSFICKDTNTTTMETESSTPYFLNGAPLGNSMSIFPYATSFQHGVHGGGVDYGLNVLPHMSGEREAMKGPLHVGLYAQQAPFDFFSGGRNNGMVMKESFNHNNYWDGTNDEYQQHQQLSSFYHHYPQQQYLMSMQQQNNHNFYNFSNSSASSTHHHHHNGENSEKVVIGDTPDAVQTPPQFFDFLGVGAT* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1996 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 178 IPR017930 -
Tpr2g1996 446 MobiDBLite consensus disorder prediction 113 135 - -
Tpr2g1996 446 ProSiteProfiles Myb-like domain profile. 127 178 IPR001005 -
Tpr2g1996 446 CDD SANT 135 176 IPR001005 -
Tpr2g1996 446 Pfam Myb-like DNA-binding domain 135 195 - -
Tpr2g1996 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 233 IPR017930 -
Tpr2g1996 446 Gene3D - 185 255 - -
Tpr2g1996 446 SUPERFAMILY Homeodomain-like 131 225 IPR009057 -
Tpr2g1996 446 CDD SANT 186 226 IPR001005 -
Tpr2g1996 446 PANTHER MYB TRANSCRIPTION FACTOR 26 446 - -
Tpr2g1996 446 ProSiteProfiles Myb-like domain profile. 179 229 IPR001005 -
Tpr2g1996 446 SMART sant 183 231 IPR001005 -
Tpr2g1996 446 SMART sant 131 180 IPR001005 -
Tpr2g1996 446 PANTHER MYB PROTEIN-RELATED 26 446 - -
Tpr2g1996 446 Gene3D - 132 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1996 Tpr-Chr2 23817267 23820239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1996 15 257 MYB Transcription Factor Family AT1G69560 51.538 1.65e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g1996 Myb_DNA-bind_6 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1996 K09422 - gmx:100789305 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1996 2 23817267 23820239 Tpr2g1996 2 23817267 23820239 ECH