Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1979 ATGTTGAATGTTGATGTAATTGGTAACAAGAAAAGGAAAAGATGTGGGAGAGTTTTTAGGTTCAAGAATTTTGGTGAACAAGGGTACCCCGTTATGTTTAATGGAACATCATTTCGTGAGAATGTTAATGCTTTACTTGAATATGCAAATTTGGAGAGTAATTTAAATATGGGAATGGCAATGTGGTCTTTTCAACTTGAATTGCATCATCATCCACCTTTGCATATTTTGTTGTTTGTGATTGAAGAATCTATTGAGGCAGCTCTCAATCGTCATTGCAACCATTGTCAATACGTTGGGTGGGGCAACCATTTCATTTGCAATAAGAAGTATCATTTCCTATTACCCTCAAAAGAAGCACTAAGTAGTTGCACAAGCTGTGAAAGTTGTTGTGATTCAATTGGTACAATGAAATTAATAGAATTAGAGGGACATATGATGCATGGTGTATTTCACTCTAATGGATTTGGACATTTGCTATGTGTTAATGGCTTGGAAACTGGTTCCAATTTGGGTGGGAATCAAATTATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACATCACAAAAAAGAGGCATGGAATTGAGACTTGTGAATGGAATAGCATACAGTGAGCCATGGTTTGGTCGTTGGGGATATAAATTTGGTCGAGGATGTTTTGGTGTAACACAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCACTATACTTACTCACACATCACATTGCAAATTTCAATCATGAAATCCCATTAATCTTCTCAAGGTACCAAACACTTTCTGATCACTCTCTTATCACACTTGGTGACTTATTTCACTACATGTTAGAGCTCAAGTCACGGCTTCCACGCGAAACATCCATTAGTTCCTACAACACAAGTGCTTTAGTCGAAACAAATTGTCGTTGGTCACCTAAAAGGATCGAAATGGCAACAAGGGTCATTGTTGAGGCCTTAAAAAGAACGGAATTCAGGTGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTATATTGGCGACACTGGTTTGTTGGATTTTGTTTTGAAGTCGCTAGGAAACCACATTGTTGGAAACTACTTGGTTCGTCGAAGTTTGAATCCGGTTACCAAAGTTTTGGAGTATTGTTTAGAAGACATTTCTAATGTTTACCCTTGTAATGAAGGGTTGGTTATGAGTAGTAGTAATAAAGTTAAGGACAAGTACAAGATCACAAGGGGTCAACTCATGAAAGACATGATTTGTTTGTATAGATACATACTAATTGACACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGAATAATTCTTGACACTAAATATTATATCAAAGACTATGGAGAGGTTCCTTTGCAAGTTGAAGTAGGATCGGAAGGAAAATTCAATCTTTATTGTACAATTTTGCTGAGGAATGTTAACAATGGAGTACATGATCATGAGTATTATTTGAACAAGGATATGCCAATGACAATTCCAATTCCAATGCCACCTTATGAATGTATCACATTGAAAAGTTGTGCTACAATTAATGACTTAAAGCTAGAAGTTGAAAGGAATTTTAGGGAAATCTATTGGGGATTAAAGAGTTTTGTAGTGGAATCTAATGGGAATTTGATGAATGCAAAAGGGAATGAAATGGTTTTTGGGATGATTGAAGTTGGTGGAAAACTTGTACTTGAAGGTTGGAATGGTGGTGACATTGGAATCAATATGGTTGAGCAAATATGTGAAAGGGATCCAAATAAAGGCATTGTTGAGTGCATTTGTGGAACTAAAGAAGATGATGGTGAGAGAATGGTGTCTTGTGATATTTGTGAAATTTGGCAACACACTAGGTGTGTTAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGTAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAA 1992 0.365 MLNVDVIGNKKRKRCGRVFRFKNFGEQGYPVMFNGTSFRENVNALLEYANLESNLNMGMAMWSFQLELHHHPPLHILLFVIEESIEAALNRHCNHCQYVGWGNHFICNKKYHFLLPSKEALSSCTSCESCCDSIGTMKLIELEGHMMHGVFHSNGFGHLLCVNGLETGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANFNHEIPLIFSRYQTLSDHSLITLGDLFHYMLELKSRLPRETSISSYNTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCNEGLVMSSSNKVKDKYKITRGQLMKDMICLYRYILIDTKPIIGSEFLSAIPLAARIILDTKYYIKDYGEVPLQVEVGSEGKFNLYCTILLRNVNNGVHDHEYYLNKDMPMTIPIPMPPYECITLKSCATINDLKLEVERNFREIYWGLKSFVVESNGNLMNAKGNEMVFGMIEVGGKLVLEGWNGGDIGINMVEQICERDPNKGIVECICGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1979 663 SMART PHD_3 607 653 IPR001965 -
Tpr2g1979 663 ProSitePatterns Zinc finger PHD-type signature. 608 652 IPR019786 -
Tpr2g1979 663 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 663 - -
Tpr2g1979 663 ProSiteProfiles Zinc finger PHD-type profile. 605 655 IPR019787 -
Tpr2g1979 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 658 IPR013083 -
Tpr2g1979 663 Pfam PHD-finger 608 654 IPR019787 -
Tpr2g1979 663 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 663 - -
Tpr2g1979 663 CDD PHD_MMD1_like 607 652 - -
Tpr2g1979 663 SUPERFAMILY FYVE/PHD zinc finger 600 655 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1979 Tpr-Chr2 23642153 23645698 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1979 10 663 PHD Transcription Factor Family AT5G22260 51.241 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr2g1979 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1979 - - mtr:MTR_5g040700 1255.74