Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1967 ATGTTTTTGGATTTCGGTCAGCTTCTAACACACTCATGTTTTTCGATTGCATACAGTGCTGCAATCAGGATAAATTTGACCATCCAATCAAAATTAGACAATCTAGATTTAAAACAGTTTAATAAAAATAATAGATCTGCTTTAAATTTGAACGAGGGACATATGATGCATGGTGTATTTCACTCTAATGGATTTGGACATTTGTTATGTGTTAATGGCTTGGAAACTGGTTCCAATTTGGGTGGGAATCAAATTATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACATCACAAAAAAGAGGCATGGAATTGAGACTTGTGAATGGAATAGCATACAGTGAGCCATGGTTTGGTCGTTGGGGATATAAATTTGGTCGAGGATGTTTTGGTGTAACACAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCACTATACTTACTCACACATCACATTGCAAATTTCAATCATGAAATCCCATTAATCTTCTCAAGGTACCAAACACTTTCTGATCACTCTCTTATCACACTTGGTGACTTATTTCACTACATGTTAGAGCTCAAGTCACGGCTTCCACGCGAAACATCCATTAGTTCCTACAACACAAGTGCTTTAGTCGAAACAAATTGTCGTTGGTCACCTAAAAGGATCGAAATGGCAACAAGGGTCATTGTCGAGGCCTTAAAAAGAATGGAATTCAGGTGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTACATTGGCGACACTGGTTTGTTGGATTTTGTTTTGAAGTCGCTAGGAAACCACATTGTTGGAAACTACTTGGTTCGTCGAAGTTTGAATCCGGTTACCAAAGTTTTGGAGTATTGTTTAGAAGACATTTCTAATGCTTACCCTTTTAATGAAGGGTTGGTTATGAGTAGTAGTAATAAAGTTAAGGACAAGTACAAGATCACAAAGGGTCAACTCATGAAAGACATGATTTGTTTGTATAAATACATACTAATTGACACAAAACCAATTATAGGGTTAGAATTTCTTTCAGCTATACCATTGGCAGCTAGAATAATTCTTGACACTAAATATTTTATCAAAGACTATGGAGAGGTTCCTTTGCAAGTTGAAGTAGGATCAGAAGGAAAATTCAATCTTTATTGTACAATTTTGTTGAGGAATGTTAACAATGTAGTACATGATCATGAGTATTATTTGAACAAGGATATGCCAATGACAATTCCAATTCCAATTCCAATGCCACCTTATGAATGTATCACATTGAAAAGTTGTGCTACAATTAATGACTTAAAGATAGAAGTTGAAAGGAATTTTAGGGAAATCTATTGGGGATTAAAGAGTTATGTAGTGGAATCTAATGGGAATTTGATGAATGCAAAAGGGAATGAAATGGTTTTTGGGATGATTGAAGTTGGTGGAAAACTTGTACTTGAAGGTTGGAATGGTGGTGACATTGGAATCAATATGGTTGAGCAAAGGGATCCAAATAAAGGCATTGTTGAGTGCATTTGTGGAACTAAAGAAGATGATGGTGAGAGAATGGTGTCTTGTGATATTTGTGAAATTTGGCAACACACTAGGTGTGTTAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGTAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAA 1716 0.3601 MFLDFGQLLTHSCFSIAYSAAIRINLTIQSKLDNLDLKQFNKNNRSALNLNEGHMMHGVFHSNGFGHLLCVNGLETGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANFNHEIPLIFSRYQTLSDHSLITLGDLFHYMLELKSRLPRETSISSYNTSALVETNCRWSPKRIEMATRVIVEALKRMEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNAYPFNEGLVMSSSNKVKDKYKITKGQLMKDMICLYKYILIDTKPIIGLEFLSAIPLAARIILDTKYFIKDYGEVPLQVEVGSEGKFNLYCTILLRNVNNVVHDHEYYLNKDMPMTIPIPIPMPPYECITLKSCATINDLKIEVERNFREIYWGLKSYVVESNGNLMNAKGNEMVFGMIEVGGKLVLEGWNGGDIGINMVEQRDPNKGIVECICGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1967 571 SMART PHD_3 515 561 IPR001965 -
Tpr2g1967 571 CDD PHD_MMD1_like 515 560 - -
Tpr2g1967 571 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 47 571 - -
Tpr2g1967 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 566 IPR013083 -
Tpr2g1967 571 Pfam PHD-finger 516 562 IPR019787 -
Tpr2g1967 571 ProSiteProfiles Zinc finger PHD-type profile. 513 563 IPR019787 -
Tpr2g1967 571 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 47 571 - -
Tpr2g1967 571 ProSitePatterns Zinc finger PHD-type signature. 516 560 IPR019786 -
Tpr2g1967 571 SUPERFAMILY FYVE/PHD zinc finger 507 563 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1967 Tpr-Chr2 23582982 23586227 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1967 52 571 PHD Transcription Factor Family AT5G22260 51.103 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr2g1967 PHD 1.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1967 - - mtr:MTR_5g040700 979.163