Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1963 ATGAGTAGTAGTAATAAAGTTAAGGACAAGTACAAGATCACAAGGGGTCAACTCATGAAAGACATGATTTGTTTGTATAGATACATACTAATTGACACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGAATAATTCTTGACACTAAATATTATATCAAAGACTATGGAGAGGTTCCTTTGCAAGTTGAAGTAGGATCGGAAGGAAAATTCAATCTTTATTGTACAATTTTGCTGAGGAATGTTAACAATGGAGTACATGATCATGAGTATTATTTGAACAAGGATATGCCAATGACAATTCCAATTCCAATGCCACCTTATGAATGTATCACATTGAAAAGTTGTGCTACAATTAATGACTTAAAGCTAGAAGTTGAAAGGAATTTTATGGAAATCTATTGGGGATTAAAGAGTTTTGTAGTGGAATCTAATGGGAATTTGATGAATGCAAAAGGGAATGAAATGGTTTTTGGGATGATTGAAGTTGGTGGAAAACTTGTACTTGAAGGTTGGAATGGTGGTGACATTGGAATCAATATGGTTGAGCAAATATGTGAAAGGGATCCAAATAAAGGCATTGTTGAGTGCATTTGTGGAACTAAAGAAGATGATGGTGAGAGAATGGTGTCTTGTGATATTTGTGAAATTTGGCAACACACTAGGTGTGTTAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGTAAATGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAA 777 0.3411 MSSSNKVKDKYKITRGQLMKDMICLYRYILIDTKPIIGSEFLSAIPLAARIILDTKYYIKDYGEVPLQVEVGSEGKFNLYCTILLRNVNNGVHDHEYYLNKDMPMTIPIPMPPYECITLKSCATINDLKLEVERNFMEIYWGLKSFVVESNGNLMNAKGNEMVFGMIEVGGKLVLEGWNGGDIGINMVEQICERDPNKGIVECICGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKWCEQEIVLFPSLP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1963 258 Pfam PHD-finger 203 249 IPR019787 -
Tpr2g1963 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 251 IPR013083 -
Tpr2g1963 258 SMART PHD_3 202 248 IPR001965 -
Tpr2g1963 258 CDD PHD_MMD1_like 202 247 - -
Tpr2g1963 258 ProSitePatterns Zinc finger PHD-type signature. 203 247 IPR019786 -
Tpr2g1963 258 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 4 258 - -
Tpr2g1963 258 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 4 258 - -
Tpr2g1963 258 SUPERFAMILY FYVE/PHD zinc finger 195 250 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1963 Tpr-Chr2 23569670 23570446 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1963 12 258 PHD Transcription Factor Family AT5G22260 39.544 2.14e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr2g1963 PHD 4.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1963 - - mtr:MTR_5g040700 467.618