Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1962 ATGAGCGATCACTTGGTACTCATCGTTGACCAACTCGTCCGCCCAGTTCCTGTTGTCGACCCTGTTCACCTTCCTTCCGAATCATCTCCATCTCCGCCTACCGTCGATGAAGCTTCCGGATCATCCGGATCTGCTTCATCGATGGAGGATCGGGATGGCAATGATGAGGAGGAGCCGCTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAAGAAGACAGCGTTTCCAATTTGGAGACTCCTTGCGCCTGTAGCGGTAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAACATTGGTGCAATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCACCACCTCGTCCTAACCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCAGAACGTCAATTCCTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCACTTTTACTTCTGCGGCATGCACTCTCTGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGACGACAAAGACAAGAGGCAGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGCCTACACTTTGCAATAGCACCAGCACCGGCACCAGCACCAGGACCTACAATACAGCAAGAACAAGTGTAG 870 0.4839 MSDHLVLIVDQLVRPVPVVDPVHLPSESSPSPPTVDEASGSSGSASSMEDRDGNDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLHFAIAPAPAPAPGPTIQQEQV* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1962 289 MobiDBLite consensus disorder prediction 24 55 - -
Tpr2g1962 289 CDD RING_CH-C4HC3_MARCH 66 112 - -
Tpr2g1962 289 Coils Coil 154 174 - -
Tpr2g1962 289 MobiDBLite consensus disorder prediction 29 48 - -
Tpr2g1962 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 272 IPR033275 -
Tpr2g1962 289 SUPERFAMILY RING/U-box 64 116 - -
Tpr2g1962 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 121 IPR013083 -
Tpr2g1962 289 Pfam RING-variant domain 66 111 IPR011016 GO:0008270
Tpr2g1962 289 ProSiteProfiles Zinc finger RING-CH-type profile. 58 118 IPR011016 GO:0008270
Tpr2g1962 289 SMART ringv_2 65 112 IPR011016 GO:0008270
Tpr2g1962 289 Pfam Protein of unknown function (DUF3675) 117 236 IPR022143 -
Tpr2g1962 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1962 Tpr-Chr2 23560435 23563948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1962 65 141 C3H Transcription Factor Family AT2G37950 35.955 1.57e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1962 - - gmx:100779674 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1962 2 23560435 23563948 Tpr2g1962 2 23560435 23563948 ECH