Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1926 ATGTCTAGCAGAAGATCTCGTTCTAGACAATCTGGTGGTTCATCTGAAATCACTGATGCTCAAATAACTGATCTCATCTCCAAGTTACAACAACTCATCCCCGAACTTCGCGCTAGCCGCTCCAATAAGGTTTCAGCTACTAAGGTATTGCAAGAGACTTGCAACTACATAAAAAACTTGCATAGAGAGGTTGATGATTTAAGTGACCGATTGTCACAACTTTTGGCTACTACAGATTCCAACAGTGCTCAAGCAGCTATTATTAGGAGCTTACTTATGTAA 282 0.4043 MSSRRSRSRQSGGSSEITDAQITDLISKLQQLIPELRASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1926 93 Coils Coil 57 77 - -
Tpr2g1926 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Tpr2g1926 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Tpr2g1926 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Tpr2g1926 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Tpr2g1926 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Tpr2g1926 93 CDD bHLH_AtPRE_like 17 77 - -
Tpr2g1926 93 Gene3D - 4 90 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1926 Tpr-Chr2 23111487 23113157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1926 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 68.085 1.51e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g1926 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1926 - - gmx:100791371 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1926 2 23111487 23113157 Tpr2g1926 2 23111487 23113157 ECH
Tpr2g1926 2 23111487 23113157 Tpr3g4389 3 48815000 48817066 ECH
Tpr2g1926 2 23111487 23113157 Tpr6g3168 6 34241381 34242890 ECH
Tpr2g1926 2 23111487 23113157 Tpr2g0357 2 4282403 4286134 ECH