Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1923 ATGACAGGCCTAGACAAAGCAATGCATGAGATGGCTTTCTTCCAAGCAAATTTCATGTTACAAACTCCTCACCACCATGATGATCATCATCAACATCATCATCCACCACCTTCACTCAACTCAATTCTACCTCAAGATTATCATGGGGGACCATCATTTCTTGGAAAGAGATCTATGTCATTTTCATCAGGAATTGAACTAGGAGAAGAAGCCAATATTGCTGAGGAAGATTTATCTGATGATGGATCGCAAGCTGGTGAGAAGAAGAGGAGACTTAACATGGAACAAGTGAAAACACTTGAGAAAAGTTTTGAGCTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTAAATTTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAATAGGAGAGCAAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATGTCCTTAAAAGACAATATGATGCTGTCAAGTTAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAAGCAGAGATATTGGCATTGAAAAATAGAGAACCAACAGAATCAATCAACCTAAACAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAAAATAGTTCAGATATCAAGTTAGATATCTCAAGAACACCAGCTAGTGATAGTCCTTTATCTACACAACACCATACTTTCTTTCCACCTTCATCAAGGCCTTCAGGTGGAATTGCTCAACTTTTCCAAACTACTTCAAGGCCAGAACTTCAATGTCAAAAGATTGATCAATTGGTCAAAGAAGAAAGTTTAAGCAACATGTTTTGTGGTATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA 873 0.3837 MTGLDKAMHEMAFFQANFMLQTPHHHDDHHQHHHPPPSLNSILPQDYHGGPSFLGKRSMSFSSGIELGEEANIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISRTPASDSPLSTQHHTFFPPSSRPSGGIAQLFQTTSRPELQCQKIDQLVKEESLSNMFCGMDDQAGFWPWLEQQHFN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1923 290 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Tpr2g1923 290 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Tpr2g1923 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 9 290 - -
Tpr2g1923 290 MobiDBLite consensus disorder prediction 191 233 - -
Tpr2g1923 290 MobiDBLite consensus disorder prediction 188 238 - -
Tpr2g1923 290 Pfam Homeobox associated leucine zipper 143 183 IPR003106 GO:0006355|GO:0043565
Tpr2g1923 290 Coils Coil 135 183 - -
Tpr2g1923 290 CDD homeodomain 88 144 IPR001356 GO:0003677
Tpr2g1923 290 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Tpr2g1923 290 SMART HOX_1 86 147 IPR001356 GO:0003677
Tpr2g1923 290 Gene3D - 80 149 - -
Tpr2g1923 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 290 IPR045224 GO:0003700
Tpr2g1923 290 SUPERFAMILY Homeodomain-like 81 145 IPR009057 -
Tpr2g1923 290 MobiDBLite consensus disorder prediction 24 47 - -
Tpr2g1923 290 MobiDBLite consensus disorder prediction 72 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1923 Tpr-Chr2 23076578 23079017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1923 11 290 Homeobox Transcription Factor Family AT1G69780 63.176 2.35e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g1923 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1923 K09338 - gmx:100808033 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1923 2 23076578 23079017 Tpr2g1923 2 23076578 23079017 ECH