Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1910 ATGTCAAAATTATACCATTTCTTCCTTTTGACCTGTTTGGTAGTAATCATACATACAACATTAGTGCAGGCTAATGTAAAAGAATATAACTCCTACTGGAATAAGGTGCTTCCATCACTTAATAATTCATATTGGCAGGAAAAAGCAGCAATTGCTGCAAAGGCAAACGATGAAGCTTATACTCCCGACCCATATGCAGTCACCGGAAACATGAGTTATGCTGTTAGCGAAATGATAATTGGCGGCAATAAAGGAAGAAGGAATCTGGGGACCCTTAAACATGGTCCATGCAAGGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGACCCTAACTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACTACTGGTGGAAAAGCCGGTCCTATCTATGTGGTAACTAGTCCCTTAGATAATGACATGGTGAATCCACGTCCAGGTACCCTTAGGCACGCAGTTACAAGAAATGGACCATTGTGGATCATCTTCGCTCGTAGCATGAACATTAGGCTCAGCCAGGAACTCATAATGACAAGCGACAAGACCATTGATGGACGAGGAGCTGATATTGTCATTGCAAATGGTGCTGGTTTTACTATCCAGTTCATTAGGAATGTGATCATCCATGGGATCAAAGTTTTTGACATTAATATTGGCACTGGTGGACTTATTAGAGATTCAGAGAACCATTATGGTCAAAGGACTATGAGTGACGGCGATGGAATTTCAATTTATGCCTCCAGCAATGTTTGGATTGACCATGTTTCGATGAGAAACTGCAGAGATGGACTCATTGATGCCATTATGGGATCCACTGCTATTACCATCTCCAATAGCCATTTCACAGATCACAACGAGGTGATGCTGTTTGGTGCAAGTGATGGCTATGATGGTGATCAGAAAATGCAGATCACACTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATGGGGTTTTATCCATGTACTTAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGTAGCAAACACCCTACCATTATAAGCGAGGGTAACCGATTCATTGCCCCTAACAATGGCTATGCTAAAGAGATAACAAAGAGGGAGTACACACCAGAGTCAGAGTGGAAAAGCTGGACATGGAGATCAATCAACGACGTGTACCTGAACGGAGCATTTTTCAGACAAGGTGGATCTGTTCTGGCTAACAGACCATTCTCCCGGAAGGACATGATCACAGCTAAACCTGGAACTTATGTGGGAAGGCTTACTCGTTATTCTGGAAGCCTTAGATGCATAGTGGGAAGGCCTTGTTAA 1353 0.4324 MSKLYHFFLLTCLVVIIHTTLVQANVKEYNSYWNKVLPSLNNSYWQEKAAIAAKANDEAYTPDPYAVTGNMSYAVSEMIIGGNKGRRNLGTLKHGPCKATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKAGPIYVVTSPLDNDMVNPRPGTLRHAVTRNGPLWIIFARSMNIRLSQELIMTSDKTIDGRGADIVIANGAGFTIQFIRNVIIHGIKVFDINIGTGGLIRDSENHYGQRTMSDGDGISIYASSNVWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDGYDGDQKMQITLAFNHFGKRLIQRMPRCRWGFIHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNGYAKEITKREYTPESEWKSWTWRSINDVYLNGAFFRQGGSVLANRPFSRKDMITAKPGTYVGRLTRYSGSLRCIVGRPC* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1910 450 Pfam Pectate lyase, N terminus 43 89 IPR007524 GO:0030570
Tpr2g1910 450 Gene3D - 100 443 IPR012334 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Tpr2g1910 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Tpr2g1910 450 PANTHER PECTATE LYASE 18-RELATED 6 450 IPR045032 GO:0030570
Tpr2g1910 450 SUPERFAMILY Pectin lyase-like 101 440 IPR011050 -
Tpr2g1910 450 SMART amb_all 175 372 IPR002022 -
Tpr2g1910 450 PANTHER PECTATE LYASE 6 450 - -
Tpr2g1910 450 Pfam Pectate lyase 185 366 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1910 Tpr-Chr2 22836851 22839747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1910 5 450 Polysaccharide Lyase AT1G14420 58.442 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1910 K01728 - gmx:100796307 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1910 2 22836851 22839747 Tpr2g1910 2 22836851 22839747 ECH
Tpr2g1910 2 22836851 22839747 Tpr5g3010 5 53040393 53042477 ECH
Tpr2g1910 2 22836851 22839747 Tpr6g3197 6 34490125 34492809 ECH
Tpr2g1910 2 22836851 22839747 Tpr2g0372 2 4448766 4451084 ECH