Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1904 ATGGAATCAAATTCAATTACAATAAAACAATCCTTCGAAGAATTTTACTCACACCACGCGCGCGAATCGCTCGACGAATTGTCTGAAAATTTTACAATAACCGACCCTTCAATTTCAGGCCATCCTATAATTTTCGCAAGTCACGCGTTTCTTAAGATGACTGGTTTCACGCGCGATGAAGTTGTTGGAAGAAGTGGTTCCATTTTTCAAGGTCCTGCTACTTGTCGTAGGTCGGTGTTGGAAATTCGTGAAGCTGTTAGAGAAGAAAGAGAAACCAATGTTGTTTTGGTTAATTATCGTAAAAATGGAACACCTTTTTGGATTTTGTTGAATGTTTCTCCTGTTTTTTGTAAACTTCGTGGTTCTGTTGTTCATTTTGTTGCTGTTCAGGTTCCTTTAGATACAAGATCGAGGGTTTCTAGTAGTAGTTCTGTTCAGGTTCATGATTTTGTTTTTCGTTGTTGTCGAAAAGAAGTTTGTTCTGATTCTTTGGCTGAACTTGGTCGTGTTTCTTCCGGGAATCAAGTGTTCGAAAATGATGTCACTGAATTGGACAGTGAAGAGCCACGCGAGGCAAGTGACGATGAGAGGAGAAGTGCTGTGGCTGCCATGGACAACATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACTGGAAGATTGGTGTGTAGAAAGAGACGCAGCACTCCTGACGTCGGTCTTCTCAGCTCGTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTATGCCAGTGACGCCTTCATGAAATTGACAGGTTATGCGAGACACGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGATGACTCAACTCTACATCTGATAACAGAAAGCATAAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCATATCTCACCTGTTCGGGATGCTTCTGGAAAGGTAGCATACTTTGTAGGAGTTCAAATAGAAGACGAGTATAAAAACGAGGACTATAGACGGTGTTTGAGACCTGACATGAAACAGCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCCATGTCTGCTGGATCGTCTAAGAGATAG 1176 0.4099 MESNSITIKQSFEEFYSHHARESLDELSENFTITDPSISGHPIIFASHAFLKMTGFTRDEVVGRSGSIFQGPATCRRSVLEIREAVREERETNVVLVNYRKNGTPFWILLNVSPVFCKLRGSVVHFVAVQVPLDTRSRVSSSSSVQVHDFVFRCCRKEVCSDSLAELGRVSSGNQVFENDVTELDSEEPREASDDERRSAVAAMDNIFSVLTHYSELTGRLVCRKRRSTPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYARHEVLGRNCRFLGGRNTDDSTLHLITESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEDEYKNEDYRRCLRPDMKQLSVVGVVKVAVRSLSMSAGSSKR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1904 391 SMART pas_2 18 91 IPR000014 -
Tpr2g1904 391 SMART pas_2 237 310 IPR000014 -
Tpr2g1904 391 SMART pac_2 312 352 IPR001610 -
Tpr2g1904 391 SMART pac_2 93 136 IPR001610 -
Tpr2g1904 391 PANTHER PROTEIN TWIN LOV 1 8 389 - -
Tpr2g1904 391 TIGRFAM sensory_box: PAS domain S-box protein 43 123 IPR000014 -
Tpr2g1904 391 TIGRFAM sensory_box: PAS domain S-box protein 262 347 IPR000014 -
Tpr2g1904 391 CDD PAS 43 116 IPR000014 -
Tpr2g1904 391 ProSiteProfiles PAS repeat profile. 262 284 IPR000014 -
Tpr2g1904 391 SUPERFAMILY PYP-like sensor domain (PAS domain) 252 348 IPR035965 -
Tpr2g1904 391 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Tpr2g1904 391 Gene3D PAS domain 30 153 - -
Tpr2g1904 391 Gene3D PAS domain 249 386 - -
Tpr2g1904 391 ProSiteProfiles PAC domain profile. 309 363 IPR000700 -
Tpr2g1904 391 CDD PAS 258 347 IPR000014 -
Tpr2g1904 391 Pfam PAS domain 41 130 IPR000014 -
Tpr2g1904 391 Pfam PAS domain 249 348 IPR000014 -
Tpr2g1904 391 PANTHER PROTEIN TWIN LOV 1 8 389 - -
Tpr2g1904 391 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 130 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1904 Tpr-Chr2 22743853 22749140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1904 235 365 AGC Kinase Gene Family AT5G58140 39.394 6.28e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1904 - - gmx:100799855 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1904 2 22743853 22749140 Tpr2g1904 2 22743853 22749140 ECH