Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1899 ATGAGTCGTAAGAGAGACAACTCCCACTTTTCCCGCCACGACTTCAAGCGCCGTCGTCCACTACCGGAGCCGGCGGAGGAAGAAAAACCTACCACAAGACCAACGCCGCCGTCTGCAGTGGTCGTCATGGGTCTTCCTCTTGATTGTTCCGTCCTCGATCTCAAGTCTCGGTTCGAGATCTACGGCTCCATCTCCCGCATCCGTATCGACCGTGACGCCGTCGGATACATCACCTACCGGACCAAAGACTCCGCCGACGCCGCCATTGCTGCTGGACACGATCCTTCGTTTGGACTCACCGTCAATTCTAAAAAGGTTCAGGTATTGTGGGCAACAGATCCTCTAGCAATGTGGAGGGAAGGAGTTGGTAAGAATAAGGATGGTGTGTCTATGTCAAAGCTTGTGCGAGCCGAGGTACCTTTGAGGAGGCATGGAAGAGGTAATAAGCTTGCTTCTGCTATTGGGAATACTAAAAGTAGTGAGGATGGTTCTGGTAGCTCAGTTATTGAAGTTCCTTTCAGGGGAAGAGAAATTGTTGCTTATGATGATATCATAAGAAACAGCACAAAGCAAGAAAGTAAAAGTAGAGTGATGGAAGAAAGTGAAGAAGAGAAGAAGAAATCAGAAAGATTATTATTATGGAGTTGGGGTGCTGGAACAGATGGTCAATTAGGAACAGAAAGACTTCAAGATCAACAAATTCCTCAACAACTGTCTATCTCCTCTGTCTCTTCACTTGCCTGTGGCGGCGCTCATGTCATCGCCTTAACTTCTGCTGGGAAGGTATTGTCATGGGGTAGGGGCAGTTCTGGTCAACTAGGCCATGGAGAGGTTGTCAATAATGTATTGCATCCCAAGGCTGTAACATCATTGGATAATTACTTCATAACTCATGTCTCTGCTGGTTGGAGTCACTCAGGTTTTGTTTCAGATAAAGGGTGCTTATTCACCTGTGGGGATGGTTCCTTTGGTCAACTTGGACATGGTGATTATGCCTCACACAGTTCACCTGTCATAGTGTCATCCTTTGTTGGTCAGCATGTTGCACAGGTAGCATGTGGAATGCGCCATTCTCTTGTCTTGTTGAAAGGTTCTCTTTCAAATCAAGTTTATGGATTTGGTTCTGGGAAGCGTGGTCAATTGGGTGTCTCCAAAGATAAAATCAAATATATTAATCTTCCTGAAGTTGTTAATGGATTTGAAGATGTGGAAATAGTTGGAGTTTCTGCAAATGGAGATCATAGTGCTGCATTATCTGTTGATGGGAATCTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATTCTCACCTTCCACAATGCTTAAACTCTACATTGAAATTTACTAAAGCTACTCTAGGGTGGAACCATGCTTTAGCTATGACTGGTGAAGGCGAGGTTTATATGCTTGGTGGCAACCACCTTGGAGTGCTTAGTGATCTTCACACTGTAAGACAGGCTAAGCAGTTAACCGATTCAAGAGAAGCCAATTTGGAGAAAGTGCCTGGTCTTGATGAAACAAAGATTACTGATATTGCTACTGGAGCTGAGCATTCTGTCCTTGTCACAGAGAATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGCTTAGGGGATGATGGTGACCGAATCAGTCCTGTTACAGTAAGTCTTGGCTATGATCTAAGCGAAGCTGCATCAACCAAAGTCTATTGCGGAAGCGGCTTCACGTTTGCTTTAACTAAGCCCTAA 1746 0.4536 MSRKRDNSHFSRHDFKRRRPLPEPAEEEKPTTRPTPPSAVVVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRTKDSADAAIAAGHDPSFGLTVNSKKVQVLWATDPLAMWREGVGKNKDGVSMSKLVRAEVPLRRHGRGNKLASAIGNTKSSEDGSGSSVIEVPFRGREIVAYDDIIRNSTKQESKSRVMEESEEEKKKSERLLLWSWGAGTDGQLGTERLQDQQIPQQLSISSVSSLACGGAHVIALTSAGKVLSWGRGSSGQLGHGEVVNNVLHPKAVTSLDNYFITHVSAGWSHSGFVSDKGCLFTCGDGSFGQLGHGDYASHSSPVIVSSFVGQHVAQVACGMRHSLVLLKGSLSNQVYGFGSGKRGQLGVSKDKIKYINLPEVVNGFEDVEIVGVSANGDHSAALSVDGNLYTWGRGFKGFEDSHLPQCLNSTLKFTKATLGWNHALAMTGEGEVYMLGGNHLGVLSDLHTVRQAKQLTDSREANLEKVPGLDETKITDIATGAEHSVLVTENGEIKTWGWGEHGQLGLGDDGDRISPVTVSLGYDLSEAASTKVYCGSGFTFALTKP* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1899 581 PRINTS Chromosome condensation regulator RCC1 signature 369 385 IPR000408 -
Tpr2g1899 581 PRINTS Chromosome condensation regulator RCC1 signature 405 418 IPR000408 -
Tpr2g1899 581 PRINTS Chromosome condensation regulator RCC1 signature 513 529 IPR000408 -
Tpr2g1899 581 PRINTS Chromosome condensation regulator RCC1 signature 529 543 IPR000408 -
Tpr2g1899 581 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 213 575 - -
Tpr2g1899 581 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 527 581 IPR000408 -
Tpr2g1899 581 Gene3D - 182 488 IPR009091 -
Tpr2g1899 581 SUPERFAMILY RCC1/BLIP-II 213 483 IPR009091 -
Tpr2g1899 581 CDD RRM_SF 40 108 - -
Tpr2g1899 581 Pfam Regulator of chromosome condensation (RCC1) repeat 527 578 IPR000408 -
Tpr2g1899 581 Pfam Regulator of chromosome condensation (RCC1) repeat 260 308 IPR000408 -
Tpr2g1899 581 Pfam Regulator of chromosome condensation (RCC1) repeat 312 361 IPR000408 -
Tpr2g1899 581 Pfam Regulator of chromosome condensation (RCC1) repeat 369 418 IPR000408 -
Tpr2g1899 581 Pfam Regulator of chromosome condensation (RCC1) repeat 213 256 IPR000408 -
Tpr2g1899 581 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 421 IPR000408 -
Tpr2g1899 581 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 260 312 IPR000408 -
Tpr2g1899 581 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 351 361 IPR000408 -
Tpr2g1899 581 MobiDBLite consensus disorder prediction 1 38 - -
Tpr2g1899 581 MobiDBLite consensus disorder prediction 16 30 - -
Tpr2g1899 581 PANTHER OS01G0777800 PROTEIN 213 575 - -
Tpr2g1899 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Tpr2g1899 581 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Tpr2g1899 581 SUPERFAMILY RNA-binding domain, RBD 27 118 IPR035979 GO:0003676
Tpr2g1899 581 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 211 259 IPR000408 -
Tpr2g1899 581 SMART rrm1_1 39 109 IPR000504 GO:0003723
Tpr2g1899 581 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 513 523 IPR000408 -
Tpr2g1899 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Tpr2g1899 581 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 526 IPR000408 -
Tpr2g1899 581 Gene3D - 489 581 IPR009091 -
Tpr2g1899 581 Gene3D - 1 115 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1899 Tpr-Chr2 22611987 22620931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1899 1 185 Homeobox Transcription Factor Family AT1G27050 52.195 9.54e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1899 - - gmx:100793672 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1899 2 22611987 22620931 Tpr2g1899 2 22611987 22620931 ECH