Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1892 ATGGGTATTGATGATTACTACAAAATACTAAAGGTGAATCGTGATGCAACCTATGAAGAGTTGAGCGAATCGTTTAACAATTTATCATTGAAATGGCATCCTGATAAGATTAAACAATACCCTTTAAGGAAACAAGAGTTTGAGACAAAGTTTAAGAAAATTTCTGAAGCTTATGATGTTCTTAGTGATCCTAGGAAGCGTCAGATCTATGATAAATATGGTAAATATCCTATGAATTTTGATGGTTTCAATGATGGTGATGGGAATAATATTAAGGTAGATGAAGATGTTGGAGCTGTTGAGACTGAGTTTTATTGTACTCTTGAAGAGCTTTATAGGGGTTGCAGAAAGAAGGTTAAGATAATAAGGACTGTTCCTGATGGGTTTGGGAGAACGAAGTGTGTAGAAGAACTCTTGAAGATATCTATTAAACCTGGTTGGAAAAAGGGTACAAAAATCACGTTTCCTGGGCAAGGAAATGAACGACCAGGATCTCCTCCATCTGATCTAATCTTTGTGGTGATGGAGACACCACATGATACATTCAAAAGGGATGGAAATGATTTGATAATGACTCAAAAGATATCACTTCTAGAAGCTCTTGTTGGAACGACTTTCAACGTAACAACCTTGGATGGAAGAGATATCACAGTTGAAGTGACTGATCTTGTTACGCCACAATATGAAAAGGTGGTTTCTGATGAAGGTATGCCACTTGCAAAGGAACCAAGTAAGAAAGGAAAGCTTAGAATCAACTTTCATGTTGAGTATCCATCAATGCTAACCGCTCTACAAAAGCATGATGTAAGAAGGATTTTGCGTGATGCTACATATAACTAA 840 0.3667 MGIDDYYKILKVNRDATYEELSESFNNLSLKWHPDKIKQYPLRKQEFETKFKKISEAYDVLSDPRKRQIYDKYGKYPMNFDGFNDGDGNNIKVDEDVGAVETEFYCTLEELYRGCRKKVKIIRTVPDGFGRTKCVEELLKISIKPGWKKGTKITFPGQGNERPGSPPSDLIFVVMETPHDTFKRDGNDLIMTQKISLLEALVGTTFNVTTLDGRDITVEVTDLVTPQYEKVVSDEGMPLAKEPSKKGKLRINFHVEYPSMLTALQKHDVRRILRDATYN* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1892 279 SMART dnaj_3 4 66 IPR001623 -
Tpr2g1892 279 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Tpr2g1892 279 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 275 - -
Tpr2g1892 279 CDD DnaJ 5 63 IPR001623 -
Tpr2g1892 279 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Tpr2g1892 279 Pfam DnaJ C terminal domain 100 258 IPR002939 -
Tpr2g1892 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 101 180 IPR008971 GO:0006457|GO:0051082
Tpr2g1892 279 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 275 - -
Tpr2g1892 279 SUPERFAMILY Chaperone J-domain 3 86 IPR036869 -
Tpr2g1892 279 Pfam DnaJ domain 5 71 IPR001623 -
Tpr2g1892 279 CDD DnaJ_C 100 261 - -
Tpr2g1892 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 267 IPR008971 GO:0006457|GO:0051082
Tpr2g1892 279 Gene3D - 98 177 - -
Tpr2g1892 279 Gene3D DnaJ domain 1 85 IPR036869 -
Tpr2g1892 279 PRINTS DnaJ domain signature 7 25 IPR001623 -
Tpr2g1892 279 PRINTS DnaJ domain signature 25 40 IPR001623 -
Tpr2g1892 279 PRINTS DnaJ domain signature 46 66 IPR001623 -
Tpr2g1892 279 PRINTS DnaJ domain signature 66 85 IPR001623 -
Tpr2g1892 279 Gene3D - 179 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1892 Tpr-Chr2 22522289 22525388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1892 6 73 C2H2 Transcription Factor Family AT1G74250 34.783 1.09e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1892 K09510 - gmx:100778440 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1892 2 22522289 22525388 Tpr2g1892 2 22522289 22525388 ECH