Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1888 ATGGATCATCAGTCCCTCCTCAGATTTGATGTGAGTCCTAGCCGTGAACCAATCCTACAACAACAGTTACAACAAGACATTGACATGCCTTCTTGGTTCTTCATTGATTTTGAATTCATCAACACAATTTTCCCATGGGATTCTTTTCGTAATACCAATGTGTACGATGAAACAGACAATGTATATCTTACGATTCCTACTGAACTCTTATGTAATTGTACGGATAACGATAATAAAAGTGTTATGTATGACATATTTTCCTTCGTGTCTACCAACATATTAGACACAATTTTACCGGAATTGGAAGAATGTGCTAAACAAATGGTTGCAGAGAATCATGAAGAACGTGAATTTTTGGAGATGGATTTGTTGATTCATATTAGCACAATAAACATGGTAGGTGAAGAAAATCAGAATGATAATGGTCAAGCTCAACAAATTGTGGATTTGTTGGAGAAATATTCAATTGATTATCTTTCTTCCGACTCGACTACAGAACAATGTTCAATTTGTTTGGAGGAGTTTGGGACTAGTTCAGAACCAGTTTCTACAAAATGCTCGCATGTTTTTCATAAAGAGTGCATGGTTCCTTGGATCCAAAGATGCATCGACTGTTCATCTTTTTATTCTTGTCCATTATGTCGAGGTCAAATAATATGA 660 0.3561 MDHQSLLRFDVSPSREPILQQQLQQDIDMPSWFFIDFEFINTIFPWDSFRNTNVYDETDNVYLTIPTELLCNCTDNDNKSVMYDIFSFVSTNILDTILPELEECAKQMVAENHEEREFLEMDLLIHISTINMVGEENQNDNGQAQQIVDLLEKYSIDYLSSDSTTEQCSICLEEFGTSSEPVSTKCSHVFHKECMVPWIQRCIDCSSFYSCPLCRGQII* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1888 219 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 66 215 - -
Tpr2g1888 219 SUPERFAMILY RING/U-box 167 218 - -
Tpr2g1888 219 Pfam Ring finger domain 167 215 IPR001841 -
Tpr2g1888 219 ProSiteProfiles Zinc finger RING-type profile. 168 215 IPR001841 -
Tpr2g1888 219 SMART ring_2 168 214 IPR001841 -
Tpr2g1888 219 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 66 215 - -
Tpr2g1888 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 219 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1888 Tpr-Chr2 22491428 22492087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1888 119 219 C3H Transcription Factor Family AT1G49850 28.713 5.64e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1888 - - mtr:MTR_5g006240 198.749