Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1869 ATGGTTGTTGTGTTGTTTCCTTCAACTGTTTGGAAAGATATGCTTAAGACCAATGTTTTAAAAAACAAACAGGAAGTTGAACCAATGAGTCCTTCTGGTTCATGGTTCAACTGGTTAAACTGTTTACTGAAGAAGGTGAATGAACTCAGCACTCTTTGTGGGGTAGAAGCATGCATTATAATCTATCCTGAAAACAGTGCTCAGCCAGATATTTGGCCACCTGGTCTGAGAACAAGAAATGTGTTAGGAAAGTTCATGAGTTTGCCCGAACTTGAAAGAAACAAAAAGATGCTAGACTCGGAGGGTTTCGCGAATCAAACCCTAGAGAAAACTCAAAAGATATTGATGAAACAAATTGAGAAAAACCAGAAGAAATCTGGCATTTTTATTAGTGATACCTATAAGAATCTAGAATGTGATACTAGAGATCTCAACATTAATGAAGCCAATAATTGGAAGGGGTTTATTGAGAAGAGACTGAATGAAGTCGAACAAAAGTTGATTTCGATAAAAATTCAAGCTGAAGAGGAGACTGAGAATGGAATTGAAGCTGTCAATGGAATAGCTAATCTGGGTCATGTTGCTGATGCGTAA 594 0.3721 MVVVLFPSTVWKDMLKTNVLKNKQEVEPMSPSGSWFNWLNCLLKKVNELSTLCGVEACIIIYPENSAQPDIWPPGLRTRNVLGKFMSLPELERNKKMLDSEGFANQTLEKTQKILMKQIEKNQKKSGIFISDTYKNLECDTRDLNINEANNWKGFIEKRLNEVEQKLISIKIQAEEETENGIEAVNGIANLGHVADA* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1869 197 Gene3D - 39 138 IPR036879 GO:0003677|GO:0046983
Tpr2g1869 197 Coils Coil 160 180 - -
Tpr2g1869 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 65 IPR002100 GO:0003677|GO:0046983
Tpr2g1869 197 SUPERFAMILY SRF-like 38 98 IPR036879 GO:0003677|GO:0046983
Tpr2g1869 197 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 40 176 - -
Tpr2g1869 197 PANTHER MADS BOX PROTEIN 40 176 - -
Tpr2g1869 197 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1869 Tpr-Chr2 22273122 22274963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1869 46 167 Type I MADS-box Gene Family AT5G48670 33.858 1.24e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g1869 SRF-TF 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1869 - - mtr:MTR_2g016210 160.614