Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1862 ATGTCTCTATCTCGCACGTGCTCACACTGCGGCAACAACGGCCACAACTCTCGAACATGCAACGACGGAGGAGGAGGTGATGGTGGTGGCGGTGGAGGAGAAAACAGCATCATGATTTTCGGTGTTAGACTCACTGCAGGAACCACCACCACAGCCGCCGCCAACACCACCACCACCACCACCACCCACAATAATCCTTTCAGAAAAAGTGCCAGCATGACAAATCTCTCTCAATATCAACAACAGCCTCCTCAAGATTCAACATCCGCCGATGCCGGTTATGTCTCCGATGATGTTGTTCATGCTTCCGGCCGATCCCGTGAACGCAAACGAGGTGTTCCTTGGACGGAGGAAGAACACAAGTTGTTCTTGTTGGGGTTGCAACAGGTTGGTAAAGGTGATTGGAGAGGAATTTCTAGAAACTTTGTCAAAACTCGCACACCAACTCAGGTTGCAAGTCATGCTCAGAAATATTTCCTCCGCCGTCATAACCAAAACCGCCGCCGCCGGAGATCTAGTCTCTTTGATATCACCACTGATACGGTGATGGAATCTTCAACTATGATGAAAGATGAACAATTTCAACAAGAAACTGTGGTGCCTCTACCACCACCTACCCCCACTGCATATCCATCCTCCCACTATGGCGGCATCCCCGGGACCCCTTTCCCGATTGGTCTTGGTCCGGTAGCATTGCCGGTGATGAGTGGTGAAATTGCAGCCAAGCCAATTAGACCAACACCAATGTTGCCTCCTTCTTCTAAGATGGCTAATTTGAACTTGAAAGACAAGGCATCTTCTGCTTCTTCTTCCATTGAGCCTTTCCCATTGTCATTGAATTTGCATTCTTCGCCTCCGTCGAACGATCATTCACCAGAAACTAGCGGCCATTCGTCGCCATCGGCTTCGTCATCGGCTTTTAATTCTATGTCTGCAGGCAATTATAGTGGTGGGGGTGGGGATAGCATTATCAGTGTTGCCTGA 984 0.4949 MSLSRTCSHCGNNGHNSRTCNDGGGGDGGGGGGENSIMIFGVRLTAGTTTTAAANTTTTTTTHNNPFRKSASMTNLSQYQQQPPQDSTSADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTMMKDEQFQQETVVPLPPPTPTAYPSSHYGGIPGTPFPIGLGPVALPVMSGEIAAKPIRPTPMLPPSSKMANLNLKDKASSASSSIEPFPLSLNLHSSPPSNDHSPETSGHSSPSASSSAFNSMSAGNYSGGGGDSIISVA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1862 327 Gene3D - 113 164 - -
Tpr2g1862 327 ProSiteProfiles Zinc finger CCHC-type profile. 7 20 IPR001878 GO:0003676|GO:0008270
Tpr2g1862 327 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 39 323 - -
Tpr2g1862 327 MobiDBLite consensus disorder prediction 281 306 - -
Tpr2g1862 327 ProSiteProfiles SANT domain profile. 110 163 IPR017884 -
Tpr2g1862 327 SUPERFAMILY Homeodomain-like 109 162 IPR009057 -
Tpr2g1862 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 163 IPR017930 -
Tpr2g1862 327 CDD SANT 114 159 IPR001005 -
Tpr2g1862 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 110 161 IPR006447 GO:0003677
Tpr2g1862 327 Pfam Myb-like DNA-binding domain 114 159 IPR001005 -
Tpr2g1862 327 SMART sant 111 161 IPR001005 -
Tpr2g1862 327 ProSiteProfiles Myb-like domain profile. 107 159 IPR001005 -
Tpr2g1862 327 PANTHER TRANSCRIPTION FACTOR KUA1 39 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1862 Tpr-Chr2 22187579 22192506 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g1862 Myb_DNA-binding 5.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1862 - - mtr:MTR_5g037080 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1862 2 22187579 22192506 Tpr2g1862 2 22187579 22192506 PCT