Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1853 ATGAAGGAAATTTTAGAAGGTCACATTGATCTGATATTAAAATTTAACACCTTCATGCCAAAACAATATCAAATCAAGGATGAAAAATGTTTCCCGAAGAAACGTCCTTGTTTGGAAGATGCTACACAAAATTTGAGAGAGATTAAGAAAATGAAGGATTCTTCAAATACTATGGATCAAATATCTATCGATGCCGCCAAGATGTATCTTACTGAAATCGAGGATGAGTTCAAAGACGATACGGGCAAGTACTATGAGTTTTTAAGGGCAATGAGAGATTTCAGGACAAGAAGAATTGATATGGCAGGTTTGATGTCAAGAGTGAAGGAATTATTTAAAGGGCACAAAAAATTATTAGTAAAATTTAATACATTTTTGCCAGAGACGTGTTCAAAAAATACATTTTTGCCAGATGATGATGAGGTTTCTTCTCAACCAAAGAAGCCAACAGTGGATTTAGAATATGCTAAGAAATATTTGGTCAATGTGAAGACTCAATTTCAACATGAACCTCATATTTACAAATCGTTTCTAAAGATAGTGAATATGTACAGAAATGAAGATAAGAGTGCTAAAGAGGTCATGCAGATGGTTATTTCACTTTTTGAAGGTCACCCGGATCTTGTTGATGGGTTTATGGTTTTTCTTGGGTAA 654 0.3379 MKEILEGHIDLILKFNTFMPKQYQIKDEKCFPKKRPCLEDATQNLREIKKMKDSSNTMDQISIDAAKMYLTEIEDEFKDDTGKYYEFLRAMRDFRTRRIDMAGLMSRVKELFKGHKKLLVKFNTFLPETCSKNTFLPDDDEVSSQPKKPTVDLEYAKKYLVNVKTQFQHEPHIYKSFLKIVNMYRNEDKSAKEVMQMVISLFEGHPDLVDGFMVFLG* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1853 217 SUPERFAMILY PAH2 domain 59 128 IPR036600 GO:0006355
Tpr2g1853 217 SUPERFAMILY PAH2 domain 146 217 IPR036600 GO:0006355
Tpr2g1853 217 Gene3D Paired amphipathic helix 65 127 IPR036600 GO:0006355
Tpr2g1853 217 Gene3D Paired amphipathic helix 156 216 IPR036600 GO:0006355
Tpr2g1853 217 ProSiteProfiles PAH domain profile. 59 129 IPR003822 GO:0006355
Tpr2g1853 217 Pfam Paired amphipathic helix repeat 172 216 IPR003822 GO:0006355
Tpr2g1853 217 Pfam Paired amphipathic helix repeat 83 126 IPR003822 GO:0006355
Tpr2g1853 217 PANTHER SIN3B-RELATED 54 216 IPR039774 GO:0003714
Tpr2g1853 217 PANTHER SIN3B-RELATED 1 53 IPR039774 GO:0003714
Tpr2g1853 217 ProSiteProfiles PAH domain profile. 147 217 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1853 Tpr-Chr2 22024320 22025635 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1853 53 140 WRKY Transcription Factor Family AT4G12020 37.500 1.22e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g1853 PAH 3.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1853 K11644 - mtr:MTR_7g013410 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1853 2 22024320 22025635 Tpr2g1853 2 22024320 22025635 ECH