Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1847 ATGATGCTTGAAAGGGTTCATGAATGTGCTACTAGAGATGCCTTCAATTTTTACGACGAAGTAAAGAATAGATTCCAAGGTGACAAGCTGAAAGACTTTATAATCGCCTTCAACGATTATAAGAAACAAAGAGACCTTGGGATTTTCGTAGAAAAAATGAAGGAAATTTTAGAAGGTCACATAGATCTGATATTAAAATTTAACACCTTCATGCCAAAACAATATCAAATCAAGGATGAAAAATGTTGCCCGAAGAAACGTCCTTGTTTGGAAGATGCTACACAAAATTTGAGAGAGATTAAGAAAATGAAGGATTCTTCAAATACTATGGATCAAATATCTATCGATGCAGCCAAGATGTATCTCACTGAAATCGAGGATGAGTTCAAAGACGATACGGGCAAGTACTACGAGTTTTTAAGGGCAATGAGAGATTTCAGGACAAGAAGAATTGATATGGCAGGTTTGATGTCAAGAGTGAAGGAATTATTTAAAGGGCACAAAAAATTGTTATTAAAATTTAATACATTTTTGCCAGAGACGTCTTCAAAAAATACATTTTTGCCAGATGATGATGAGGTTTCTTATCAACCAAAGAAGCCAACAGTGGATTTAGAATATGCTAAGAAATATTTGGTCAATGTGAAGACTCAATTTCAACATGAACCTCATATTTACAAATCGTTTCTAAAGATAGTGAATATGTACAGAAATGAAGATAAGAGTGCTAAAGAGGTCATGCAGATGGTTATTTCACTTTTTGAAGGTCACCCAGATCTTGTTGATGGGTTTATGGTTTTTCTTGGGTAA 810 0.342 MMLERVHECATRDAFNFYDEVKNRFQGDKLKDFIIAFNDYKKQRDLGIFVEKMKEILEGHIDLILKFNTFMPKQYQIKDEKCCPKKRPCLEDATQNLREIKKMKDSSNTMDQISIDAAKMYLTEIEDEFKDDTGKYYEFLRAMRDFRTRRIDMAGLMSRVKELFKGHKKLLLKFNTFLPETSSKNTFLPDDDEVSYQPKKPTVDLEYAKKYLVNVKTQFQHEPHIYKSFLKIVNMYRNEDKSAKEVMQMVISLFEGHPDLVDGFMVFLG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1847 269 ProSiteProfiles PAH domain profile. 111 181 IPR003822 GO:0006355
Tpr2g1847 269 Gene3D Paired amphipathic helix 117 179 IPR036600 GO:0006355
Tpr2g1847 269 Gene3D Paired amphipathic helix 13 72 IPR036600 GO:0006355
Tpr2g1847 269 Gene3D Paired amphipathic helix 208 268 IPR036600 GO:0006355
Tpr2g1847 269 SUPERFAMILY PAH2 domain 198 269 IPR036600 GO:0006355
Tpr2g1847 269 Pfam Paired amphipathic helix repeat 224 268 IPR003822 GO:0006355
Tpr2g1847 269 Pfam Paired amphipathic helix repeat 135 178 IPR003822 GO:0006355
Tpr2g1847 269 SUPERFAMILY PAH2 domain 111 180 IPR036600 GO:0006355
Tpr2g1847 269 ProSiteProfiles PAH domain profile. 199 269 IPR003822 GO:0006355
Tpr2g1847 269 ProSiteProfiles PAH domain profile. 7 74 IPR003822 GO:0006355
Tpr2g1847 269 SUPERFAMILY PAH2 domain 9 73 IPR036600 GO:0006355
Tpr2g1847 269 PANTHER SIN3B-RELATED 106 268 IPR039774 GO:0003714
Tpr2g1847 269 PANTHER SIN3B-RELATED 11 100 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1847 Tpr-Chr2 21946962 21948573 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1847 11 77 WRKY Transcription Factor Family AT4G12020 39.130 1.32e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g1847 PAH 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1847 K11644 - mtr:MTR_7g013410 150.599