Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1845 ATGAGCAACTTGAGCCGAGGAAAATCATTGATGAAAAACATACGTTCCATGGAACTTAAAGAAGGTTTAGAATTTATGAAAGAAGTGAAGAGAATATTTATTCAAGAAAATAAGAAGGATAAGTATGATGACTTTATGAGACTCATGAATGCTTATAAGAAACAAAGGATTGATTTTCAGGATTTAATAAAAAGATTGACGGAAATATTTCAAGGGCATAGCGATTTGCAACGGAGATTAAACCAATTCTTACCAATTGGATATGAAATCGAACTTCCATCGAAGAGTGAACAATCTTGCCAAAAGAAACAGGTTAATAAGGAAGATGCTGTAAATTTTTTGAAAAAGATAAAGACTCAGTTTCAAGACATTGAAGATGTTCACATTTACTATTCATTTCTTCACATATTAATTATGTATTATAAGAAACAGAAGTCTTTCACTGAGGTCTGCCAAGAGGTTGCTTTTATTTTCAAAGATCATCCCGACCTTCTTGATGAGTTTACTCAATTTCTCCCAGAAGCTATTTCTTCTCATTATGCTACTACTCAGAATTTTGTGCGTCGAGCTATGTAG 576 0.3264 MSNLSRGKSLMKNIRSMELKEGLEFMKEVKRIFIQENKKDKYDDFMRLMNAYKKQRIDFQDLIKRLTEIFQGHSDLQRRLNQFLPIGYEIELPSKSEQSCQKKQVNKEDAVNFLKKIKTQFQDIEDVHIYYSFLHILIMYYKKQKSFTEVCQEVAFIFKDHPDLLDEFTQFLPEAISSHYATTQNFVRRAM* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1845 191 ProSiteProfiles PAH domain profile. 15 87 IPR003822 GO:0006355
Tpr2g1845 191 Gene3D Paired amphipathic helix 99 175 IPR036600 GO:0006355
Tpr2g1845 191 Pfam Paired amphipathic helix repeat 40 84 IPR003822 GO:0006355
Tpr2g1845 191 Pfam Paired amphipathic helix repeat 128 172 IPR003822 GO:0006355
Tpr2g1845 191 PANTHER SIN3B-RELATED 14 182 IPR039774 GO:0003714
Tpr2g1845 191 ProSiteProfiles PAH domain profile. 103 175 IPR003822 GO:0006355
Tpr2g1845 191 Gene3D Paired amphipathic helix 22 85 IPR036600 GO:0006355
Tpr2g1845 191 SUPERFAMILY PAH2 domain 16 88 IPR036600 GO:0006355
Tpr2g1845 191 SUPERFAMILY PAH2 domain 101 173 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1845 Tpr-Chr2 21931416 21933074 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1845 13 92 WRKY Transcription Factor Family AT4G12020 32.500 5.09e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g1845 PAH 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1845 K11644 - gmx:100817626 176.792