Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1842 ATGAAACGGTTACGGGACGAAGGTTTCACGAGTTCTTCTTCTCAACTCAAACGAGAACAGTCTGGGCAACCTCAGATGATGAATGGAGCTGGTCAAAAACTGACTACTAATGATGCCTTAGCGTATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATATGATGAATTTTTGGAGGTCATGAAAGAGTTTAAAGGACAGAGAATTGATACTGTGGGTGTCATCGCTAGAGTGAAGGATCTTTTTAGAGGTCACACAGATTTGATATTAGGATTCAACACCTTTTTGCCAAAGGGATATGAAATCACCCTTCCGATAGAGGATGAGCAACCTCACCCGAAAAAGCCAGTTGAATTTGATGAAGCTATGAGTTATGTGAACAAGATAAAGACTCGGTTTCGTGGCGATGATCGTGTTTACAAGTCATTTCTAGAAATATTGAATATGTACAGAAAGGAAAATAAGTCTATCGACGCGGTCTACCAGGAGGTTGCTGCCCTCTTTGAAGACCACCCAGATCTTCTTGACGGGTTTATTCAGTTTCTTCCTGACGCTACCACAGCTGCCTCTACTCATGCTGCTGCTCGGAATTCTGTGTTTCGTGATAGGCGCTCTGCAATGCCAACAGTGCGGCAAGTGCATGTTGAAAAGAGAGAAAGGACCATTGTTTCACACGGTGACCGTGACCCCAGTGTTGACCGTCCTGACCCAGAGCATGATGGACGCTTGTTCAGGGCTGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAAAAGAGCCGCAGAGAAGATAGAGACAGGAGAGAACGAGAACGAAATGATAGAGATTATGAGCATGACAGGGGTCGAGATAGGGAACGGTTATCCCAGAAACGGAAATCTGATCATAAGGTTGAAGACTCAGGAGCTGAACCATTGCTTCATGCAGATCAAAATTTTGGTATGTATAGTCAAGAGTTAGCTTTCTGTGCTGAAGTCAAAGAGAGATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGATTTACTGGGAAAGTATCCAGATCTTATGGAAGGGTTTAATGATTTTTTGCTTCAAGCTGAGAAAAATGATGGTGGATTCCTTGTTGGTGTCATGAATAAAAAGTCCTTATGGATTGAAGGAAATGGACTGAAACCAATGAAGGCTGAACGGAGGGATAGAGATAGGGGTTATGATAAAGATCGTTACAGGGATGATGGGATGAAAGAAAGAGATCGTGAATCCCGAGAAAGGGATAAATCTACTACAATTTCCAACAAGGATGTTTCAGGTTCTAAGATGTCTATATATCCCAGCAAGGATAAGTATCTCTCAAAACCAATAAATGAGCTGGACCTTTCTAACTGTGAGCAATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAGAACAGAACTTGGTGCGGAAGTGTTGAACGATCACTGGGTGTCGGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAATCTGTAAACGTGACAACTAAACGAGTAGAAGAGCTGTTAGAAAAGGTCAACAATAATCTAATTAGAAGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATTTCAGGTGTATTGAACGAATATATGGTGACCATGGTCTTGATGCCTTGGAAGTGCTAAAGAAGAATGCATCCCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGAGTGGGAAAGATGTCGTGCTGATTTCAGTAAAGTATGGGCTGAAATATATTCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGACACAAAAAGTTTGAGCACCAAAGCCTTACTGGCCGAAATCAAAGAAATCAATGAGAAGAAACTCAAAGAAGACGATGTTCTTCTTGCAAATGCTGCTGGAAATAGACGGCCTATTTTTCCAAACCTGGAGTTTGAGTATCTTGATCCACACATTCATGAAGATTTGTATCAGCTTATAAAATATTCGTGTGGAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAATCCATGTTTTGTGTTCCTTGTCGGCCCCAGGGTGCTGAAGATACTGAAGATGTTGTTGTGGCTAAGAATAATTCTGGGAGAAATGTTGCTGAAAGTGATGGTAGTCCTGGGGTTGGCGCTACCATAGTGAACCCAAAGCATATAAATACTTCTAGAAATGGTGACGAGTGTGTGCCATTAGATCAGTCAACTTCTAGCAAAGCATGGGAATCAAATGGTGATACTGGGATTAGAGAAGATAAATGCCTTGATTCAGATTGTACTGTGCGTAAAAGTGAAACTTGCGGCAGTAATCCACAACACGGTAACCCGGATATTATAGCATTCACGCCTACTGAGCTATCAGGAGTCAATATGCAAGATCTCTCTGGTGAGCGGTTAGTGAATGCTAATGTTGCACCAGCATCTGGAGTGGAGCTGAGTAATGGAAGTACAAAGATAGATAATGCATCAGGACTTGCTGCTACTCCATCTAGAAATGGTAATGTATCTGTCGTGGGAGGACTTGAATTACCTTCATCAGAGGGTGGTGATTCTGCAAGACCAGGTACATCCACAAATGGGGCCATCGCTGGAGGCACTGAAGTTTCCAGAGACCTAGAGGAATCAAATCGACAGTTCAAAAGCGAAAGAGAAGAGGGTGAGTTGTCTCCAATTGGAGAATTTGAAGGGGAAGAAGCCAGGAGAGAGAATTATGCGGATGCTGATGATGAAGGGGAAGAAAGTCCTCAGAGGTCATCAGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGCGAATCTGCTGATGGAGAGGAGGGTTCTCAAGAAGAGCATGAGGATGGAGAACATGATGATAAGGCTGAAAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCGCATGACATTGAAGGAGATGGAACGCCATTGCCATTTTCTGAACGCTTTCTTCTAAACGTGAAGCCATTGGCAAAGCATGTTCCCCCAGTGTTCCATGTTAAAGACAGGAATTCTCCTGTTTTTTATGGAAATGACTCCTTTTATGTCCTGATTAGACTTCATCAGACATTGTATGAGAGGATACATTCAGCAAAGGCTAACTCAACATCCACTGAAAGGAAATGGAGGGCTTCAAATGATACAAACTCTACTGATCAATACGACAGGTTCATGAATTCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACCAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTGGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTATTGCGAGTGATGAGATGGATAATAAGCTTCTTCAACTATATGCATATGAGAAATCAAGAAAACATGAAAAGTTTGTCGATATAGTTTATCACGAAAATGCTCGTATTCTTCTTCACGATGAGAACATATATCGCATTGAATATTCACCAAAACCAAAGACACTCTCTATTCAACTCATGGATTGTGGAAATGATAAGCATGAAGTGACTGCTGTGTCAATGGACCCGGAATTTTCAGCCTATCTGAACAATGATTTCCTCATTATTGTCCCCGATGAGAACTACTCAGGGATTTTCTTGAAAAGGAACAAACGGGGATATTCCTGTAGTGATGAATTTTCATGTGAGGTTATGGAAGGACTACAAGTTATTAATGGTCTCGAGTGTAAGATAGCTTGCGATTCTTCTAAGGTGTCGTACGTTTTAGATACAGAAGACTTCTTGTTTCGGACTAGAAGCAGAAGAAAAGCTTTGCATCTGAAGAGTTCGTGCCATGAACAAGAGAAGTCTTCAAACATTCGTTCCAAAAGAGTAGCAAGGTTCCGCAAATTGTTGTCCTTGACATGA 4113 0.4109 MKRLRDEGFTSSSSQLKREQSGQPQMMNGAGQKLTTNDALAYLKAVKDIFQDKRDKYDEFLEVMKEFKGQRIDTVGVIARVKDLFRGHTDLILGFNTFLPKGYEITLPIEDEQPHPKKPVEFDEAMSYVNKIKTRFRGDDRVYKSFLEILNMYRKENKSIDAVYQEVAALFEDHPDLLDGFIQFLPDATTAASTHAAARNSVFRDRRSAMPTVRQVHVEKRERTIVSHGDRDPSVDRPDPEHDGRLFRAEKEHKRRVEKEKSRREDRDRRERERNDRDYEHDRGRDRERLSQKRKSDHKVEDSGAEPLLHADQNFGMYSQELAFCAEVKERLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNDFLLQAEKNDGGFLVGVMNKKSLWIEGNGLKPMKAERRDRDRGYDKDRYRDDGMKERDRESRERDKSTTISNKDVSGSKMSIYPSKDKYLSKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKVNNNLIRRDSPIRIEEHLTALNFRCIERIYGDHGLDALEVLKKNASLALPVILTRLKQKQEEWERCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEINEKKLKEDDVLLANAAGNRRPIFPNLEFEYLDPHIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLESMFCVPCRPQGAEDTEDVVVAKNNSGRNVAESDGSPGVGATIVNPKHINTSRNGDECVPLDQSTSSKAWESNGDTGIREDKCLDSDCTVRKSETCGSNPQHGNPDIIAFTPTELSGVNMQDLSGERLVNANVAPASGVELSNGSTKIDNASGLAATPSRNGNVSVVGGLELPSSEGGDSARPGTSTNGAIAGGTEVSRDLEESNRQFKSEREEGELSPIGEFEGEEARRENYADADDEGEESPQRSSEDSENASENVDVSGSESADGEEGSQEEHEDGEHDDKAESEGEAEGMADAHDIEGDGTPLPFSERFLLNVKPLAKHVPPVFHVKDRNSPVFYGNDSFYVLIRLHQTLYERIHSAKANSTSTERKWRASNDTNSTDQYDRFMNSLYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAIASDEMDNKLLQLYAYEKSRKHEKFVDIVYHENARILLHDENIYRIEYSPKPKTLSIQLMDCGNDKHEVTAVSMDPEFSAYLNNDFLIIVPDENYSGIFLKRNKRGYSCSDEFSCEVMEGLQVINGLECKIACDSSKVSYVLDTEDFLFRTRSRRKALHLKSSCHEQEKSSNIRSKRVARFRKLLSLT* 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 920 1039 - -
Tpr2g1842 1370 ProSiteProfiles PAH domain profile. 118 188 IPR003822 GO:0006355
Tpr2g1842 1370 ProSiteProfiles PAH domain profile. 32 102 IPR003822 GO:0006355
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 218 306 - -
Tpr2g1842 1370 Pfam Paired amphipathic helix repeat 336 380 IPR003822 GO:0006355
Tpr2g1842 1370 Pfam Paired amphipathic helix repeat 55 99 IPR003822 GO:0006355
Tpr2g1842 1370 Pfam Paired amphipathic helix repeat 142 185 IPR003822 GO:0006355
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 926 940 - -
Tpr2g1842 1370 SUPERFAMILY PAH2 domain 115 187 IPR036600 GO:0006355
Tpr2g1842 1370 Gene3D Paired amphipathic helix 38 100 IPR036600 GO:0006355
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 1024 1039 - -
Tpr2g1842 1370 SUPERFAMILY PAH2 domain 31 101 IPR036600 GO:0006355
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 412 447 - -
Tpr2g1842 1370 Gene3D Paired amphipathic helix 315 384 IPR036600 GO:0006355
Tpr2g1842 1370 Pfam Sin3 family co-repressor 480 571 IPR013194 -
Tpr2g1842 1370 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 14 419 - -
Tpr2g1842 1370 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 442 1348 - -
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 8 29 - -
Tpr2g1842 1370 PANTHER SIN3B-RELATED 442 1348 IPR039774 GO:0003714
Tpr2g1842 1370 PANTHER SIN3B-RELATED 14 419 IPR039774 GO:0003714
Tpr2g1842 1370 SUPERFAMILY PAH2 domain 318 382 IPR036600 GO:0006355
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 412 454 - -
Tpr2g1842 1370 Gene3D Paired amphipathic helix 117 189 IPR036600 GO:0006355
Tpr2g1842 1370 Pfam C-terminal domain of Sin3a protein 1085 1330 IPR031693 -
Tpr2g1842 1370 SMART hdac_interact2seq4b 478 578 IPR013194 -
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 218 308 - -
Tpr2g1842 1370 ProSiteProfiles PAH domain profile. 311 383 IPR003822 GO:0006355
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 946 1000 - -
Tpr2g1842 1370 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1842 Tpr-Chr2 21893330 21907393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1842 23 114 WRKY Transcription Factor Family AT4G12020 57.447 4.00e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g1842 Sin3a_C 1.2e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1842 K11644 - gmx:100811928 2043.85