Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g1842 | ATGAAACGGTTACGGGACGAAGGTTTCACGAGTTCTTCTTCTCAACTCAAACGAGAACAGTCTGGGCAACCTCAGATGATGAATGGAGCTGGTCAAAAACTGACTACTAATGATGCCTTAGCGTATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATATGATGAATTTTTGGAGGTCATGAAAGAGTTTAAAGGACAGAGAATTGATACTGTGGGTGTCATCGCTAGAGTGAAGGATCTTTTTAGAGGTCACACAGATTTGATATTAGGATTCAACACCTTTTTGCCAAAGGGATATGAAATCACCCTTCCGATAGAGGATGAGCAACCTCACCCGAAAAAGCCAGTTGAATTTGATGAAGCTATGAGTTATGTGAACAAGATAAAGACTCGGTTTCGTGGCGATGATCGTGTTTACAAGTCATTTCTAGAAATATTGAATATGTACAGAAAGGAAAATAAGTCTATCGACGCGGTCTACCAGGAGGTTGCTGCCCTCTTTGAAGACCACCCAGATCTTCTTGACGGGTTTATTCAGTTTCTTCCTGACGCTACCACAGCTGCCTCTACTCATGCTGCTGCTCGGAATTCTGTGTTTCGTGATAGGCGCTCTGCAATGCCAACAGTGCGGCAAGTGCATGTTGAAAAGAGAGAAAGGACCATTGTTTCACACGGTGACCGTGACCCCAGTGTTGACCGTCCTGACCCAGAGCATGATGGACGCTTGTTCAGGGCTGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAAAAGAGCCGCAGAGAAGATAGAGACAGGAGAGAACGAGAACGAAATGATAGAGATTATGAGCATGACAGGGGTCGAGATAGGGAACGGTTATCCCAGAAACGGAAATCTGATCATAAGGTTGAAGACTCAGGAGCTGAACCATTGCTTCATGCAGATCAAAATTTTGGTATGTATAGTCAAGAGTTAGCTTTCTGTGCTGAAGTCAAAGAGAGATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGATTTACTGGGAAAGTATCCAGATCTTATGGAAGGGTTTAATGATTTTTTGCTTCAAGCTGAGAAAAATGATGGTGGATTCCTTGTTGGTGTCATGAATAAAAAGTCCTTATGGATTGAAGGAAATGGACTGAAACCAATGAAGGCTGAACGGAGGGATAGAGATAGGGGTTATGATAAAGATCGTTACAGGGATGATGGGATGAAAGAAAGAGATCGTGAATCCCGAGAAAGGGATAAATCTACTACAATTTCCAACAAGGATGTTTCAGGTTCTAAGATGTCTATATATCCCAGCAAGGATAAGTATCTCTCAAAACCAATAAATGAGCTGGACCTTTCTAACTGTGAGCAATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAGAACAGAACTTGGTGCGGAAGTGTTGAACGATCACTGGGTGTCGGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAATCTGTAAACGTGACAACTAAACGAGTAGAAGAGCTGTTAGAAAAGGTCAACAATAATCTAATTAGAAGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATTTCAGGTGTATTGAACGAATATATGGTGACCATGGTCTTGATGCCTTGGAAGTGCTAAAGAAGAATGCATCCCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGAGTGGGAAAGATGTCGTGCTGATTTCAGTAAAGTATGGGCTGAAATATATTCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGACACAAAAAGTTTGAGCACCAAAGCCTTACTGGCCGAAATCAAAGAAATCAATGAGAAGAAACTCAAAGAAGACGATGTTCTTCTTGCAAATGCTGCTGGAAATAGACGGCCTATTTTTCCAAACCTGGAGTTTGAGTATCTTGATCCACACATTCATGAAGATTTGTATCAGCTTATAAAATATTCGTGTGGAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAATCCATGTTTTGTGTTCCTTGTCGGCCCCAGGGTGCTGAAGATACTGAAGATGTTGTTGTGGCTAAGAATAATTCTGGGAGAAATGTTGCTGAAAGTGATGGTAGTCCTGGGGTTGGCGCTACCATAGTGAACCCAAAGCATATAAATACTTCTAGAAATGGTGACGAGTGTGTGCCATTAGATCAGTCAACTTCTAGCAAAGCATGGGAATCAAATGGTGATACTGGGATTAGAGAAGATAAATGCCTTGATTCAGATTGTACTGTGCGTAAAAGTGAAACTTGCGGCAGTAATCCACAACACGGTAACCCGGATATTATAGCATTCACGCCTACTGAGCTATCAGGAGTCAATATGCAAGATCTCTCTGGTGAGCGGTTAGTGAATGCTAATGTTGCACCAGCATCTGGAGTGGAGCTGAGTAATGGAAGTACAAAGATAGATAATGCATCAGGACTTGCTGCTACTCCATCTAGAAATGGTAATGTATCTGTCGTGGGAGGACTTGAATTACCTTCATCAGAGGGTGGTGATTCTGCAAGACCAGGTACATCCACAAATGGGGCCATCGCTGGAGGCACTGAAGTTTCCAGAGACCTAGAGGAATCAAATCGACAGTTCAAAAGCGAAAGAGAAGAGGGTGAGTTGTCTCCAATTGGAGAATTTGAAGGGGAAGAAGCCAGGAGAGAGAATTATGCGGATGCTGATGATGAAGGGGAAGAAAGTCCTCAGAGGTCATCAGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGCGAATCTGCTGATGGAGAGGAGGGTTCTCAAGAAGAGCATGAGGATGGAGAACATGATGATAAGGCTGAAAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCGCATGACATTGAAGGAGATGGAACGCCATTGCCATTTTCTGAACGCTTTCTTCTAAACGTGAAGCCATTGGCAAAGCATGTTCCCCCAGTGTTCCATGTTAAAGACAGGAATTCTCCTGTTTTTTATGGAAATGACTCCTTTTATGTCCTGATTAGACTTCATCAGACATTGTATGAGAGGATACATTCAGCAAAGGCTAACTCAACATCCACTGAAAGGAAATGGAGGGCTTCAAATGATACAAACTCTACTGATCAATACGACAGGTTCATGAATTCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACCAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTGGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTATTGCGAGTGATGAGATGGATAATAAGCTTCTTCAACTATATGCATATGAGAAATCAAGAAAACATGAAAAGTTTGTCGATATAGTTTATCACGAAAATGCTCGTATTCTTCTTCACGATGAGAACATATATCGCATTGAATATTCACCAAAACCAAAGACACTCTCTATTCAACTCATGGATTGTGGAAATGATAAGCATGAAGTGACTGCTGTGTCAATGGACCCGGAATTTTCAGCCTATCTGAACAATGATTTCCTCATTATTGTCCCCGATGAGAACTACTCAGGGATTTTCTTGAAAAGGAACAAACGGGGATATTCCTGTAGTGATGAATTTTCATGTGAGGTTATGGAAGGACTACAAGTTATTAATGGTCTCGAGTGTAAGATAGCTTGCGATTCTTCTAAGGTGTCGTACGTTTTAGATACAGAAGACTTCTTGTTTCGGACTAGAAGCAGAAGAAAAGCTTTGCATCTGAAGAGTTCGTGCCATGAACAAGAGAAGTCTTCAAACATTCGTTCCAAAAGAGTAGCAAGGTTCCGCAAATTGTTGTCCTTGACATGA | 4113 | 0.4109 | MKRLRDEGFTSSSSQLKREQSGQPQMMNGAGQKLTTNDALAYLKAVKDIFQDKRDKYDEFLEVMKEFKGQRIDTVGVIARVKDLFRGHTDLILGFNTFLPKGYEITLPIEDEQPHPKKPVEFDEAMSYVNKIKTRFRGDDRVYKSFLEILNMYRKENKSIDAVYQEVAALFEDHPDLLDGFIQFLPDATTAASTHAAARNSVFRDRRSAMPTVRQVHVEKRERTIVSHGDRDPSVDRPDPEHDGRLFRAEKEHKRRVEKEKSRREDRDRRERERNDRDYEHDRGRDRERLSQKRKSDHKVEDSGAEPLLHADQNFGMYSQELAFCAEVKERLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNDFLLQAEKNDGGFLVGVMNKKSLWIEGNGLKPMKAERRDRDRGYDKDRYRDDGMKERDRESRERDKSTTISNKDVSGSKMSIYPSKDKYLSKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKVNNNLIRRDSPIRIEEHLTALNFRCIERIYGDHGLDALEVLKKNASLALPVILTRLKQKQEEWERCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEINEKKLKEDDVLLANAAGNRRPIFPNLEFEYLDPHIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLESMFCVPCRPQGAEDTEDVVVAKNNSGRNVAESDGSPGVGATIVNPKHINTSRNGDECVPLDQSTSSKAWESNGDTGIREDKCLDSDCTVRKSETCGSNPQHGNPDIIAFTPTELSGVNMQDLSGERLVNANVAPASGVELSNGSTKIDNASGLAATPSRNGNVSVVGGLELPSSEGGDSARPGTSTNGAIAGGTEVSRDLEESNRQFKSEREEGELSPIGEFEGEEARRENYADADDEGEESPQRSSEDSENASENVDVSGSESADGEEGSQEEHEDGEHDDKAESEGEAEGMADAHDIEGDGTPLPFSERFLLNVKPLAKHVPPVFHVKDRNSPVFYGNDSFYVLIRLHQTLYERIHSAKANSTSTERKWRASNDTNSTDQYDRFMNSLYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAIASDEMDNKLLQLYAYEKSRKHEKFVDIVYHENARILLHDENIYRIEYSPKPKTLSIQLMDCGNDKHEVTAVSMDPEFSAYLNNDFLIIVPDENYSGIFLKRNKRGYSCSDEFSCEVMEGLQVINGLECKIACDSSKVSYVLDTEDFLFRTRSRRKALHLKSSCHEQEKSSNIRSKRVARFRKLLSLT* | 1371 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 920 | 1039 | - | - | |
Tpr2g1842 | 1370 | ProSiteProfiles | PAH domain profile. | 118 | 188 | IPR003822 | GO:0006355 | |
Tpr2g1842 | 1370 | ProSiteProfiles | PAH domain profile. | 32 | 102 | IPR003822 | GO:0006355 | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 218 | 306 | - | - | |
Tpr2g1842 | 1370 | Pfam | Paired amphipathic helix repeat | 336 | 380 | IPR003822 | GO:0006355 | |
Tpr2g1842 | 1370 | Pfam | Paired amphipathic helix repeat | 55 | 99 | IPR003822 | GO:0006355 | |
Tpr2g1842 | 1370 | Pfam | Paired amphipathic helix repeat | 142 | 185 | IPR003822 | GO:0006355 | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 926 | 940 | - | - | |
Tpr2g1842 | 1370 | SUPERFAMILY | PAH2 domain | 115 | 187 | IPR036600 | GO:0006355 | |
Tpr2g1842 | 1370 | Gene3D | Paired amphipathic helix | 38 | 100 | IPR036600 | GO:0006355 | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 1024 | 1039 | - | - | |
Tpr2g1842 | 1370 | SUPERFAMILY | PAH2 domain | 31 | 101 | IPR036600 | GO:0006355 | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 412 | 447 | - | - | |
Tpr2g1842 | 1370 | Gene3D | Paired amphipathic helix | 315 | 384 | IPR036600 | GO:0006355 | |
Tpr2g1842 | 1370 | Pfam | Sin3 family co-repressor | 480 | 571 | IPR013194 | - | |
Tpr2g1842 | 1370 | PANTHER | PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 | 14 | 419 | - | - | |
Tpr2g1842 | 1370 | PANTHER | PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 | 442 | 1348 | - | - | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 8 | 29 | - | - | |
Tpr2g1842 | 1370 | PANTHER | SIN3B-RELATED | 442 | 1348 | IPR039774 | GO:0003714 | |
Tpr2g1842 | 1370 | PANTHER | SIN3B-RELATED | 14 | 419 | IPR039774 | GO:0003714 | |
Tpr2g1842 | 1370 | SUPERFAMILY | PAH2 domain | 318 | 382 | IPR036600 | GO:0006355 | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 412 | 454 | - | - | |
Tpr2g1842 | 1370 | Gene3D | Paired amphipathic helix | 117 | 189 | IPR036600 | GO:0006355 | |
Tpr2g1842 | 1370 | Pfam | C-terminal domain of Sin3a protein | 1085 | 1330 | IPR031693 | - | |
Tpr2g1842 | 1370 | SMART | hdac_interact2seq4b | 478 | 578 | IPR013194 | - | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 218 | 308 | - | - | |
Tpr2g1842 | 1370 | ProSiteProfiles | PAH domain profile. | 311 | 383 | IPR003822 | GO:0006355 | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 946 | 1000 | - | - | |
Tpr2g1842 | 1370 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g1842 | Tpr-Chr2 | 21893330 | 21907393 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g1842 | 23 | 114 | WRKY Transcription Factor Family | AT4G12020 | 57.447 | 4.00e-23 | 105 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Tpr2g1842 | Sin3a_C | 1.2e-58 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g1842 | K11644 | - | gmx:100811928 | 2043.85 |