Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1808 ATGGAAAAGGAAATGTGTGATATTTCTGTTGAGAAGAGGCTTAGACTATTTGGTTTTGAGCTAAATCCAACAAAGAATAATAATGAAGGACTTGTCAAAGAGTCTAATGAAGGAGATGAAAGTGTGAATTCATCTAACTCAATTTCATCAGGAGGAGAGAAAATTGTCCAAGAAAAAAATTCATCTAGAGACCAAGATGAGAGAAAATTTGAGTGTCAATATTGTTTCAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCACACAAAAAAGAAAGAATGAAGAAAAAAAGATTGCAACTTCAAGCTAGGAAAGCTAGCATAAATTATTACCTACAACCTTTTCAAAAAAATCATCATGGTTTTTCTTATAATTCTAAAGATACTCATTGGTTTTATGACCCTTCTTCTTATAATTCTGAATTTTCTTTGTGTGAAGAATCTCAAATTAGTTTTAAGTCAAAAAATGTTCATGATACCAATTCTAGTTGGTATTCTCTTCCTTCTAATGTTCCTAGTTCCCAACAAGAAACTTGCATGTTTACTCTTTCTAATATTGATGACAGGCCTTTCATTTTCAACCCTTCCTCAAACCAAATTCATAGTAAAGCTTTAGATCTTCAATTAGGCCTTACTTTGGAGTCAAATTCAATGAGCTCTTTAAAAAGGACATAA 684 0.3173 MEKEMCDISVEKRLRLFGFELNPTKNNNEGLVKESNEGDESVNSSNSISSGGEKIVQEKNSSRDQDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASINYYLQPFQKNHHGFSYNSKDTHWFYDPSSYNSEFSLCEESQISFKSKNVHDTNSSWYSLPSNVPSSQQETCMFTLSNIDDRPFIFNPSSNQIHSKALDLQLGLTLESNSMSSLKRT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1808 227 MobiDBLite consensus disorder prediction 25 64 - -
Tpr2g1808 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Tpr2g1808 227 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Tpr2g1808 227 PANTHER ZINC FINGER PROTEIN 5 7 216 - -
Tpr2g1808 227 MobiDBLite consensus disorder prediction 25 56 - -
Tpr2g1808 227 PANTHER ZINC FINGER PROTEIN 5 7 216 IPR044299 GO:0010090
Tpr2g1808 227 Gene3D Classic Zinc Finger 43 124 - -
Tpr2g1808 227 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1808 Tpr-Chr2 21387638 21388651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1808 13 113 C2H2 Transcription Factor Family AT1G68360 45.192 3.77e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g1808 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1808 - - gmx:100799857 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1808 2 21387638 21388651 Tpr2g1808 2 21387638 21388651 ECH