Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1762 ATGCATTGGATTCATTCTCAAATCACAAACCCTTCAATTATATCTCCATATTCTTCTTCTTCAATTCCTTATAATTCTAACAACAACCAGAAAAATTCAGAACAAATTCCAATTTCTTCATCTTCTAGCAACAAAATAAGCCCTGCAATTCTTTTCATCATAGTTATATTAGCTATAATATTTTTCATCTTAGGTTTACTTCATTTACTTGTTAGATTTCTCATAAAGCATAGATCTTCATCATCATCATCAACAATTTCTCAATCAAATAGGTTTCAAGAAATGTCTGAATCTGATGCATACCAAAGACAGTTACAACAACTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCATTCATTGATGCTCTTCCTGTTTTTATATACAAAGAGATTATTGGTTTGAAAGAACCATTCGATTGTGCTGTTTGTTTATGTGAGTTTTTAGAACAAGATAAGTTAAGATTATTACCTAATTGTAACCATGCTTTTCATATTAATTGTATAGATACATGGTTGTTATCAAATTCATCTTGTCCTTTATGTAGAGGTACCCTTTATTCACAAGGGTTTTCTTTTGATAAAAATCATGTTTTTGAGTTCGAGGATCAAAGAGATGAAGATTATGTTTTAGGTATTGGTTCTGTTAACAAAGATATGGAAAATAACATTATGAATGGAAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAAAAGCTCAAATAATGAAGGGGGTGTGGAAAGAAATGAAGATTTGCAAGTTACTTTGAGAGGTTCTAAAGGTGAGAGTATGAGACAATTGAAGGGAATTAGAGAAGTTTGTGATGAGAATTTTTCCAATGATGGTGATGTTGAAGGCAAAAAAATCAACATTGCAAGAAAAGGTGAAAGTTTTTCTGTTTCTAAAATATGGCAATGGTCTAAGAAAGATAGTAGGATACCAAGTTCATCAGATACACATTTTCATAATTGTGTTGCTAATGAAATGAAAGTTTGTCTTGGATGA 1008 0.3065 MHWIHSQITNPSIISPYSSSSIPYNSNNNQKNSEQIPISSSSSNKISPAILFIIVILAIIFFILGLLHLLVRFLIKHRSSSSSSTISQSNRFQEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHINCIDTWLLSNSSCPLCRGTLYSQGFSFDKNHVFEFEDQRDEDYVLGIGSVNKDMENNIMNGKRVFSVRLGKFKSSNNEGGVERNEDLQVTLRGSKGESMRQLKGIREVCDENFSNDGDVEGKKINIARKGESFSVSKIWQWSKKDSRIPSSSDTHFHNCVANEMKVCLG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1762 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 247 - -
Tpr2g1762 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 250 327 - -
Tpr2g1762 335 SUPERFAMILY RING/U-box 120 189 - -
Tpr2g1762 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 247 - -
Tpr2g1762 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 250 327 - -
Tpr2g1762 335 CDD RING-H2_PA-TM-RING 140 183 - -
Tpr2g1762 335 SMART ring_2 141 182 IPR001841 -
Tpr2g1762 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 189 IPR013083 -
Tpr2g1762 335 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Tpr2g1762 335 Pfam Ring finger domain 140 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1762 Tpr-Chr2 20834934 20836673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1762 44 289 C3H Transcription Factor Family AT2G18650 43.922 1.03e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1762 - - gmx:100805154 357.066