Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1715 ATGTCAACACTAAACCATCTCTTTGATCTTCCAGAACAAATATGTTATGTACAATGTGGATTCTGTAACACCATTTTAATGGTAAGTGTTCCATGCAACAGTTTATCAATGGTTGTGACAGTAAGATGTGGTCACTGCACAAGTCTCTTATCAGTTAATATGATGAAAGCTTCTTTTGTCCCTTTTCACCTTTTAGCATCTCTTACTCATCTTGAGCAAAAAGAAAGTAGTAGTCCAGATGAAGATGCAAACAAGGGTTTGAACAATAATAGTTCATCCATGATGACTTATTCGGATTGTGAGGAAGATGATGTAATTCCAATCACCAATGTCGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGGTTCATCAAAGAAGAGATTAAAAGGCTTAAGGCTCAACACCCTGACATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTGCCCCCCAATTCAGTTTCAAGGAGATGAAGAGAGCTGTAACCAGACAGATCAACTAGTGGATCTTGACTCCCAAGTGGACCCTCATGATGCTGAGGTGAATGAAGAAGAACATGGATTCCGTGGAAGAAAGGTACCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 651 0.3963 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCNSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEQKESSSPDEDANKGLNNNSSSMMTYSDCEEDDVIPITNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAQHPDMAHKEAFSTAAKNWANCPPIQFQGDEESCNQTDQLVDLDSQVDPHDAEVNEEEHGFRGRKVPRNSILERTPFE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1715 216 SUPERFAMILY HMG-box 109 162 IPR036910 -
Tpr2g1715 216 Pfam YABBY protein 11 165 IPR006780 GO:0007275
Tpr2g1715 216 MobiDBLite consensus disorder prediction 187 209 - -
Tpr2g1715 216 CDD HMGB-UBF_HMG-box 121 162 - -
Tpr2g1715 216 Gene3D High mobility group box domain 111 174 IPR036910 -
Tpr2g1715 216 MobiDBLite consensus disorder prediction 187 216 - -
Tpr2g1715 216 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Tpr2g1715 216 PANTHER AXIAL REGULATOR YABBY 4 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1715 Tpr-Chr2 20294051 20297105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1715 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 56.828 9.83e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tpr2g1715 YABBY 5.2e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1715 K25796 - gmx:100804172 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1715 2 20294051 20297105 Tpr2g1715 2 20294051 20297105 ECH