Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1686 ATGGAGGAAATGTACGGAGTACCATCAACGGTTGAATACGGCGGTGACAAATCACTTATGACACCGGAGAATCTAATTTTTCCTAATGACTACAACACCTTCCTCATGTCCACTTCATCCACAACCCGAATTCCTATGTTCGGATCCGACGATATCTTCACCGCCGCAGCTGAACCTTCTTCCGCCGCAATTCATCATCACGTCCCACCATCTACTGTTATGAAATCCAAAATCGCTTCTCATCCTTACTACCCTCGCCTCCTTCAAGCTTACATCGATTGTCAAAAGGTTGGTGCTCCTCCTGAAATAGCGCGTTTGTTAGAGGAAATTCGTCAAGAAAATGATCAAGTTAAAAGAGACGTAGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGATGAATTTATGGAAACTTACTGTGATATGCTTGTGAAGTATAAATCAGACCTTACTCGACCTTTTGATGAAGCTACAACTTTTCTAAACAAGATCGAAACTCAACTTAGCCATCTCTGCACTGGTGCTTCAGTTCCAACAGCTTCTGATGATGGTGCGTCTTCGGATGAAGATCTTAGTACGGGAGATGGTGAAGTTCAAGATGGACAATCAAGAGGAGAAGATCGTGAGCTCAAAGATAGGCTTCTACGCAAGTTTGGAAGTCATATTGGTACTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCAAAAGAAGCAAGACAAACACTACTTCAATGGTGGAATCTCCACTACAAATGGCCTTACCCAACGGAAGCAGATAAGATTGAACTGGCTAAGACAACAGGATTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAAAATATGCAATTTTCTATGATGGAAAATTTTACCGGACGTTTCCTTTCTGAAGAATGA 942 0.4119 MEEMYGVPSTVEYGGDKSLMTPENLIFPNDYNTFLMSTSSTTRIPMFGSDDIFTAAAEPSSAAIHHHVPPSTVMKSKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIRQENDQVKRDVVVSTCFGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHLCTGASVPTASDDGASSDEDLSTGDGEVQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNLHYKWPYPTEADKIELAKTTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFTGRFLSEE* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1686 313 CDD homeodomain 242 294 IPR001356 GO:0003677
Tpr2g1686 313 Gene3D - 229 303 - -
Tpr2g1686 313 Pfam KNOX2 domain 127 173 IPR005541 GO:0003677|GO:0005634
Tpr2g1686 313 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Tpr2g1686 313 SUPERFAMILY Homeodomain-like 231 304 IPR009057 -
Tpr2g1686 313 MobiDBLite consensus disorder prediction 178 208 - -
Tpr2g1686 313 ProSiteProfiles 'Homeobox' domain profile. 230 293 IPR001356 GO:0003677
Tpr2g1686 313 SMART ELK_2 210 231 IPR005539 GO:0003677
Tpr2g1686 313 SMART KNOX2_2 123 174 IPR005541 GO:0003677|GO:0005634
Tpr2g1686 313 SMART HOX_1 232 297 IPR001356 GO:0003677
Tpr2g1686 313 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 303 - -
Tpr2g1686 313 ProSitePatterns 'Homeobox' domain signature. 268 291 IPR017970 GO:0000981|GO:0006355
Tpr2g1686 313 Pfam ELK domain 210 231 IPR005539 GO:0003677
Tpr2g1686 313 Pfam Homeobox KN domain 250 289 IPR008422 GO:0003677|GO:0006355
Tpr2g1686 313 Pfam KNOX1 domain 74 115 IPR005540 GO:0003677|GO:0005634
Tpr2g1686 313 ProSiteProfiles ELK domain profile. 210 230 IPR005539 GO:0003677
Tpr2g1686 313 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1686 Tpr-Chr2 19986407 19998396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1686 1 313 Homeobox Transcription Factor Family AT1G23380 65.152 5.93e-143 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr2g1686 KNOX2 7.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1686 - - gmx:100794719 475.707