LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g1683	ATGGAAGTTTTCAGTTTGGTTTTATGGATACTTGGTTTGTTGCTTCATTTGCTGATGAAGATTTCTTCTGCCACTCTTTCTCCTTCTGGCATCAACTATGAAGTTGTAGCTTTGATGGCTATAAAGACCGAGTTGAATGATCCTCACAATGTTTTGGAGAATTGGGATATTAATTCTGTTGATCCATGTAGTTGGAGGATGATTACTTGTACTCCAGATGGTTCAGTTTCTGCATTGGGATTGCCTAGTCAGAATTTGTCTGGTACACTATCTCCTAAAATTGGAAACCTTACCAATTTACAATCTGTGTTACTTCAGAATAATGCTATTTCTGGTCATATTCCAGCTGCAATAGGAAGCTTGGAAAAGCTTCAGACACTTGATCTCTCTAATAATGAATTTAGTGGCGAGATGCCGAGTTCTTTGGGAGGCCTTAAGAACCTGAATTATTTGCGGTTAAATAATAACAGCCTTACCGGAGCTTGCCCTCAGTCTCTTAGCAACATCGAAAGCCTTACCCTTGTGGATCTCTCCTACAACAATTTGAGTGGTTCATTGCCAAGAATATCGGCAAGAACATTAAAGATTGTAGGTAACCCGTTAATTTGCGGTCCAAAAGAAAACAATTGTTCTACGGTATTGCCCGAGCCACTTTCCTTCCCGCCAGATGTATTAAAAGCCAAACCAGACGGTGGTAAAAAAGGCCATCATGTAGCACTTGCTTTTGGTGCAAGTTTTGGTGCCGCGTTTGTCATTGTGATTATAGTTGGACTTCTCATTTGGTGGCGGTATAGACACAATCAACAGATATTCTTTGATATTAATGAGCATTACGACCCAGAAGTGCGCCTTGGTCATTTAAAAAGGTATTCATTCAAAGAGCTTCGGGCCGCAACTGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGTTTTGGAATAGTTTACAAGGCATGCTTGAATGACGGATCCGTTGTGGCCGTTAAACGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATAAGTTTGGCTGTCCACCGAAATCTTCTGAGGCTTCGAGGGTTTTGCAGTACTCAGAATGAACGACTCCTTGTTTATCCATATATGTCTAATGGCAGTGTAGCCTCTAGATTAAAAGATCATATTCACGGTCAACCAGCTTTGGATTGGACGAGGCGAAAGAGGATAGCGTTAGGCACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGACCCTAAAATTATCCATCGCGATGTCAAAGCAGCCAACATATTGCTAGATGAAGAATTTGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAGCTTCTTGATCATAGAGATACTCATGTGACCACTGCCGTGCGTGGCACTATTGGTCACATTGCTCCTGAGTACCTATCCACTGGTCAGTCATCAGAAAAGACCGACGTGTTTGGATTTGGAATCTTGTTGCTTGAGCTTATTACAGGTCATAAGGCTCTAGATTTTGGTCGAGCAGCAAACCAGAAAGGCGTAATGCTTGATTGGGTTAAGAAACTACACCTTGAAGGAAAACTAAGTCAAATGGTAGATAAAGATCTTAAAGGCAACTTTGACATAGTTGAATTAGGAGAAATGGTTCAAGTAGCACTCTTGTGTACACAATTTAATCCTTCACACCGTCCGAAGATGTCCGAAGTGTTAAAGATGTTGGAAGGGGACGGTTTAGCTGAGAAATGGGAGGCGTCACAAAGGATCGAAACACCAAGGTTTCGGTTTTGTGAAAATCCGCCTCAAAGATATTCGGATTTTATAGAAGAATCATCACTAATAGTAGAAGCAATGGAGCTTTCTGGCCCTAGGTGA	1878	0.4132	MEVFSLVLWILGLLLHLLMKISSATLSPSGINYEVVALMAIKTELNDPHNVLENWDINSVDPCSWRMITCTPDGSVSALGLPSQNLSGTLSPKIGNLTNLQSVLLQNNAISGHIPAAIGSLEKLQTLDLSNNEFSGEMPSSLGGLKNLNYLRLNNNSLTGACPQSLSNIESLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKENNCSTVLPEPLSFPPDVLKAKPDGGKKGHHVALAFGASFGAAFVIVIIVGLLIWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLRGFCSTQNERLLVYPYMSNGSVASRLKDHIHGQPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLLDHRDTHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHLEGKLSQMVDKDLKGNFDIVELGEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQRIETPRFRFCENPPQRYSDFIEESSLIVEAMELSGPR*	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g1683	625	Pfam	Leucine rich repeat	98	156	IPR001611	GO:0005515
	Tpr2g1683	625	Pfam	Leucine rich repeat N-terminal domain	32	70	IPR013210	-
	Tpr2g1683	625	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	6	625	-	-
	Tpr2g1683	625	Gene3D	Transferase(Phosphotransferase) domain 1	379	594	-	-
	Tpr2g1683	625	Gene3D	Phosphorylase Kinase; domain 1	271	378	-	-
	Tpr2g1683	625	SMART	serkin_6	302	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g1683	625	SUPERFAMILY	Protein kinase-like (PK-like)	279	576	IPR011009	-
	Tpr2g1683	625	Pfam	Protein kinase domain	303	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g1683	625	PANTHER	PROTEIN NSP-INTERACTING KINASE 3	6	625	-	-
	Tpr2g1683	625	SMART	LRR_typ_2	121	144	IPR003591	-
	Tpr2g1683	625	SMART	LRR_typ_2	97	120	IPR003591	-
	Tpr2g1683	625	SMART	LRR_typ_2	145	168	IPR003591	-
	Tpr2g1683	625	SMART	LRR_typ_2	169	192	IPR003591	-
	Tpr2g1683	625	Gene3D	Ribonuclease Inhibitor	31	212	IPR032675	-
	Tpr2g1683	625	ProSitePatterns	Protein kinases ATP-binding region signature.	308	330	IPR017441	GO:0005524
	Tpr2g1683	625	ProSiteProfiles	Protein kinase domain profile.	302	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g1683	625	SUPERFAMILY	L domain-like	32	201	-	-
	Tpr2g1683	625	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	425	437	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g1683	Tpr-Chr2	19928098	19932891	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g1683	67	625	Receptor kinase-like Gene Family	AT1G60800	75.260	0.0	827

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Tpr2g1683		Pkinase	1.1e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g1683	-		-	gmx:100784164	1100.89