Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1678 ATGTATGATAAAAAAAACTACATGGCTTCTCTAATTCATCACCATCTTTCACTTTTTCTTCTTTTTCTAGCATTTTCATTAACAAGTGTTTTTTCCATTGAATTTTCAATAAAAAAATCTTACATGGAACCTTTTAAATGTTCCACAAAGATCAAAACATGCAATGCATCACTCTATCACATAAACTACGATCACAACATAGAACAAATAGCAAATTTTTATTCTGTTGATTCTTCCCAAATCAAACCGATTATTCGTAGCACGAAACAAGATTACCTTATAAAAGTACCTTGTTCTTGCAAAAAAACCAATGAGCTTAGTGGTTATTTCTATGATACAATCTATACCGCGAGGCGTAATGAAAGTTTTGTCGATGTTAAGAATCTTGTTTATAGCGGTCAAACTTGGCAAGACGGCGAAGATTTAGTTGCAAATGAGAATGTAACAATACATATTCCTTGTGGATGTTCTGAATTTGAGTCAGAAATTGTTGTTACATATACTGTTCAGCAGAATGATACACCAACATCAATTTCTCTTTTGCTTAATGCTACTGTTGATGGCATTGTTAGAATGAACCAAATTTTGGTTCCTAACCCTTCATTTATAGATATTGGTTGGGTGTTATATGTTCCTGATGAGGAATTAAAACGGTCCTCACATTCCAATCGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCCTATTGAGTGTGACATTACTTTCAGTTATTACTGTGATTGTTCTCATTCTTAGGAGAAATAAAGCTTATCCAACCAGCAAAACTGATCCAAGAACTTTCTCTAAAAGATCATTAGCCAATAGAACTATTTCCTTAAGAAATCACGAATTTCATAAAGAATATATGGAAGATGCAACACAATTTGAGTCAGAAAGACCAGTGATTTATGATTTTGAGGAGATTGAAGTTGCTACAAATAATTTTGATGAAACTAGAAGAATTGGAGTTGGTGGATATGGTACTGTCTATTTTGGAATGTTAGAAGATAAAGAGGTTGCTGTGAAGAAAATGAAATCTACCAAATCTAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCACATTAACATTGTGGAGTTGTTAGGATATGCAAGTGGAGATGATCACCTTTATTTGGTTTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCACTATTGAAAGGTCACCAACCTCTTTCTTGGTGTGCTAGAGCTCAAATTGCACTTGATTCAGCAAAAGGTATCGAATACATACATGATTACACGAAATCACGATACGTGCACCGTGATATAAAGACTAGCAATATTCTTCTTGATGAGAAGTTGAGAGCAAAGGTAGCCGATTTTGGACTTGCAAAGTTAGTAGAAAGAACTAATGATGAAGAATTCTTAGCTACAAGACTTGTCGGAACACCAGGCTACCTTCCACCAGAGTCTGTGAAGGAGCTTCAAGTGACAATAAAAACTGATGTATTTGCATTTGGAGTGGTTCTGTCTGAGTTGATAACAGGGAAACGTGCTTTATTTCGTGACAACAAAGAAGCCAATAATATGAAATCACTTATTGCAATTGTTAACAAAATATTTGAAGATGTTGATCCAGTGACTGCTTTAGAAGCTGTTGTAGATGGAAATCTTCAACGTAATTATCCTATTGAAGATGTCTACAAGATGGCAGAAGTATCGCATTGGTGCATGAGTGAAAATCCAGTGGACAGGCCAGAAATGAAAGAAACAGTTATAGTATTGTCAAAGATTGTAATGTCTTCAATAGAATGGGAAGCTTCACTTGGTGGGGACAGCCAAGTTTTCAGCGGTGTATTTGATGGAAGATGA 1869 0.3499 MYDKKNYMASLIHHHLSLFLLFLAFSLTSVFSIEFSIKKSYMEPFKCSTKIKTCNASLYHINYDHNIEQIANFYSVDSSQIKPIIRSTKQDYLIKVPCSCKKTNELSGYFYDTIYTARRNESFVDVKNLVYSGQTWQDGEDLVANENVTIHIPCGCSEFESEIVVTYTVQQNDTPTSISLLLNATVDGIVRMNQILVPNPSFIDIGWVLYVPDEELKRSSHSNRKEKKHKWVIIIGILLSVTLLSVITVIVLILRRNKAYPTSKTDPRTFSKRSLANRTISLRNHEFHKEYMEDATQFESERPVIYDFEEIEVATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSTKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKSRYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNKEANNMKSLIAIVNKIFEDVDPVTALEAVVDGNLQRNYPIEDVYKMAEVSHWCMSENPVDRPEMKETVIVLSKIVMSSIEWEASLGGDSQVFSGVFDGR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1678 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Tpr2g1678 622 SUPERFAMILY LysM domain 165 212 IPR036779 -
Tpr2g1678 622 Pfam Protein kinase domain 319 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g1678 622 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Tpr2g1678 622 Pfam LysM domain 167 212 IPR018392 -
Tpr2g1678 622 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 26 622 - -
Tpr2g1678 622 ProSiteProfiles Protein kinase domain profile. 318 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g1678 622 CDD LysM 165 211 IPR018392 -
Tpr2g1678 622 SMART serkin_6 318 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g1678 622 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 26 622 IPR044812 GO:0019199|GO:0045087
Tpr2g1678 622 SUPERFAMILY Protein kinase-like (PK-like) 302 592 IPR011009 -
Tpr2g1678 622 SMART LysM_2 166 212 IPR018392 -
Tpr2g1678 622 Gene3D LysM domain 161 226 IPR036779 -
Tpr2g1678 622 Gene3D Phosphorylase Kinase; domain 1 296 389 - -
Tpr2g1678 622 Gene3D Transferase(Phosphotransferase) domain 1 390 607 - -
Tpr2g1678 622 ProSiteProfiles LysM domain profile. 165 211 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1678 Tpr-Chr2 19843158 19847804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1678 298 622 Receptor kinase-like Gene Family AT1G51940 52.266 2.47e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tpr2g1678 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1678 - - gmx:100800907 879.782