Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1640 ATGGCTCGTGAGAAGATTCAGATAAAGAAGATCGAGAATGCAACGGCAAGGCAAGTTACTTTTTCAAAGAGAAGAAGAGGGTTGGTGAAAAAAGCTGAAGAACTCTCGGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTTCTACCGGGAAGCTCTTTGAGTACTCCAACTTAAGCATGAGGGAAATACTGGAAAGACATCATTTACACTCAAAGAACCTCGCAAAGATGGAAGAACCGTCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCACAAGATTAAGCAAGGAAATTTCTGAGAAGAGCCATCAACTAAGGCAGATGAGGGGAGAAGATCTTGAAGGTTTGAATGTTGAAGAATTACAACAATTGGAGAGGTCTCTTGAAATTGGGTTGAGCCGTGTAATAGAAAACAAGGGAGAGAAGATCATGATGGAGATCAATGATCTCCAAAGAAAGGGAAGGCAACTAATGGAAGAGAACAACCGACTAAAGCAACATGTGGCTGGCATAGTGACTAACGGTAAAATGGTTGGAGGAGCTGAATATGAAAATGTGGTTATTACTGAAGAAGGTCAATCGTCAGAATCTGTGACCAATGTTTACAACTCCACTGGTCCTCCACAGGACTATGAGAGCTCAGACACATCGCTCAAATTGGGGCTTCCATATGCCGGATGA 690 0.4217 MAREKIQIKKIENATARQVTFSKRRRGLVKKAEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERHHLHSKNLAKMEEPSLELQLVENSNCTRLSKEISEKSHQLRQMRGEDLEGLNVEELQQLERSLEIGLSRVIENKGEKIMMEINDLQRKGRQLMEENNRLKQHVAGIVTNGKMVGGAEYENVVITEEGQSSESVTNVYNSTGPPQDYESSDTSLKLGLPYAG* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1640 229 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g1640 229 Coils Coil 150 170 - -
Tpr2g1640 229 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Tpr2g1640 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Tpr2g1640 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g1640 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g1640 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr2g1640 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g1640 229 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Tpr2g1640 229 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Tpr2g1640 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g1640 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g1640 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g1640 229 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 226 - -
Tpr2g1640 229 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1640 Tpr-Chr2 19341100 19346545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1640 1 229 MADS-box Gene Family AT2G22540 68.750 3.74e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g1640 K-box 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1640 - - gmx:100789126 368.622