Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1618 ATGGCTCGTGCAACCACTACTAGCAACTCTAGTATTAATCATAACTGGTTATCATTTTCACTCTCACCAATGGAAATGTCTCATCTTGATTCATACGACGTCGCTTCATCCGTTACTAACAACAACAACACCTCTCATCAAAATCATCATCACTATTTCCTTGACAACATGTTTCACACTGGTTGGGGAAAGAGTACTGAAGTAGTGGCAACTGCACAAGCGCTGGAACAACCGATTTGGTTTATGGATTCAACAACGCAATCACAGAGCGTTGTTAACCACGCGCCGTCACCTAAGCTGAATGATTTTCTCGGTGACAGTCAAGCAGAGACGCAAGATGATTCTTCTTTAACAAACATGTATGATCACCACCATTACTTCGGTGGGGACCACCACCAGCATCAGCAACAGAATCATCAGGATCTTGTTGTTACTGGTTTTCAAGCTTTTTCAAACAACTCTGGTGGTGGTTCTGAAGTTGATGATTCTGGTTCGATTGGAAAATCATCACAAGCTGCATGTGGAAATGAGTTTGGAACTCATTGTGTTGAGTCTGGGAATGAGTTTGCTTACTCAGCCGCGGCTGTTAAGGCGGTTAACGGTGCTTTGTCTCTCGCCGTTGCTCGGAGCTCCGAGGAGAATGCTATTGTGGTTGCTGATTCTGATAGCTCCAAGAAAATCGCTGATACTTTTGGTCAGCGAACTTCAATTTACCGTGGTGTTACTAGGCATAGATGGACTGGAAGATATGAAGCGCATCTTTGGGATAACAGCTGTAGAAGGGAGGGTCAAGCTAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAGGAAAAGGCCGCAAGATCCTATGATTTGGCTGCCCTAAAGTATTGGGGACCCACTGCTACTACCAACTTCCCTGTTTCCAGTTATGTAAAGGAATTGGAAGAAATGAAAGAAGTAACTAAGCAAGAATTTATTGCGTCACTGCGGAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCAATCTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGGTGGCAAGCGAGAATTGGCCGTGTTGCCGGAAACAAAGACCTGTACTTGGGAACATTTGCAACTGAAGAGGAAGCGGCAGAGGCGTACGACATTGCAGCAATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATATGATGTGGATGCCATAATGCAGAGTTCTCTTCCGGTTGGTAGTACAGCGAAGCGCGTGAAGCGATCACTTGGGTCTGAACAGAAAGCTTCTGTAACCAGCAATATTCAGCAGCAGAACAACGCGGAACAGTATGCAGCATGCATGATCAATAGCAACAAAAGCAGCAACATTAATTTCTCAACCATTCCGCATCAGCTGCCAGCTGCACTGAGTACAGTCCCTTATGGAATGGTCCCCTATGATTCGAATCCTTCGGCTTATTATCATCACACCCTCTTCCAACATTTCAATTCTGAATCCAATGATGGCGCTGCAGAATCTGTTGTGAATTCCACCAATGCAACAAATGGTGGACTCAATGCCATGCCACCAACATCAGCAGCTGAGTTCTATTTATGGCCTAATCAGTCTTATTGA 1620 0.4494 MARATTTSNSSINHNWLSFSLSPMEMSHLDSYDVASSVTNNNNTSHQNHHHYFLDNMFHTGWGKSTEVVATAQALEQPIWFMDSTTQSQSVVNHAPSPKLNDFLGDSQAETQDDSSLTNMYDHHHYFGGDHHQHQQQNHQDLVVTGFQAFSNNSGGGSEVDDSGSIGKSSQAACGNEFGTHCVESGNEFAYSAAAVKAVNGALSLAVARSSEENAIVVADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYVKELEEMKEVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRVKRSLGSEQKASVTSNIQQQNNAEQYAACMINSNKSSNINFSTIPHQLPAALSTVPYGMVPYDSNPSAYYHHTLFQHFNSESNDGAAESVVNSTNATNGGLNAMPPTSAAEFYLWPNQSY* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1618 539 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 Gene3D AP2/ERF domain 237 305 IPR036955 GO:0003700|GO:0006355
Tpr2g1618 539 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700|GO:0006355
Tpr2g1618 539 SUPERFAMILY DNA-binding domain 236 305 IPR016177 GO:0003677
Tpr2g1618 539 SUPERFAMILY DNA-binding domain 338 398 IPR016177 GO:0003677
Tpr2g1618 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 535 - -
Tpr2g1618 539 CDD AP2 338 397 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 13 535 - -
Tpr2g1618 539 SMART rav1_2 237 309 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 SMART rav1_2 339 403 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 CDD AP2 236 305 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 ProSiteProfiles AP2/ERF domain profile. 237 303 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 Pfam AP2 domain 339 389 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 Pfam AP2 domain 237 295 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700|GO:0006355
Tpr2g1618 539 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1618 Tpr-Chr2 19064625 19070029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1618 81 539 AP2-EREBP Transcription Factor Family AT5G10510 54.237 2.43e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr2g1618 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1618 K09285 - gmx:100775390 589.726