Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1598 ATGGAATTTGAAGAAGATCAAGAAGAACAAGAGGAAGAGTTATGTGCGAGTTATGACTCGTTACCTAACTCATCCCGAGTTAAGATGCCAGGTGGAACTGAACCTATCATGGTGTCTCAGCCACTCAGAAACATCATGGTTAACAACAACAACAACGGAAACAGTAACATCGGTGTCGGAAACGGAAAATCAAGGTATAGAGAGTGTTTAAAGAATCATGCTGTCGGAATTGGTGGTCATGCTCTCGACGGTTGCGGCGAGTTTATGCCAGCTGGAAATGAAGGAAGTTTGGAGTCTTTAAAATGTGCTGCTTGTAATTGCCACCGTAATTTCCATCGCAAAGAGACCACGGATATTATCACCGGTGGTGGTGACCCTTTTCTGTTGACACATCATGGTCACCACCCACCACCTCCGCCACAATTTGCGGCATACTATCGTACCCCGGCCGGGTATTTGCATGTTTCTGGACAGCAGAGGCCGGGGACACTTGCTCTGCCATCCACCTCCGGTGGAGGTGGAGGGACTCAGAGTACGAGAGAAGAGCAAGAAGATGTTTCGAATCCAAGTGGTGGTGGGTCTAGTAAGAAGAGACATAGAACAAAGTTCACACCGGAGCAGAAAGATAAGATGTTGGAATTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGATTTTTGCAATGAAAGTGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 780 0.4564 MEFEEDQEEQEEELCASYDSLPNSSRVKMPGGTEPIMVSQPLRNIMVNNNNNGNSNIGVGNGKSRYRECLKNHAVGIGGHALDGCGEFMPAGNEGSLESLKCAACNCHRNFHRKETTDIITGGGDPFLLTHHGHHPPPPPQFAAYYRTPAGYLHVSGQQRPGTLALPSTSGGGGGTQSTREEQEDVSNPSGGGSSKKRHRTKFTPEQKDKMLELAEKLGWRIQKHDEGLVQDFCNESGVKRHVLKVWMHNNKHTLGKKP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1598 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 47 258 - -
Tpr2g1598 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 258 - -
Tpr2g1598 259 SUPERFAMILY Homeodomain-like 185 257 IPR009057 -
Tpr2g1598 259 MobiDBLite consensus disorder prediction 1 25 - -
Tpr2g1598 259 Gene3D - 180 256 - -
Tpr2g1598 259 Pfam ZF-HD protein dimerisation region 64 116 IPR006456 -
Tpr2g1598 259 MobiDBLite consensus disorder prediction 1 15 - -
Tpr2g1598 259 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 252 IPR006455 -
Tpr2g1598 259 MobiDBLite consensus disorder prediction 168 194 - -
Tpr2g1598 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 115 IPR006456 -
Tpr2g1598 259 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 65 115 IPR006456 -
Tpr2g1598 259 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1598 Tpr-Chr2 18809225 18810676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1598 62 255 ZF-HD Transcription Factor Family AT4G24660 54.124 6.83e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr2g1598 ZF-HD_dimer 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1598 - - gmx:100808910 307.76