Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1588 ATGGTTTTACTTCGACAGGGCATGCAACATGTTCGAAATTACTATAACTCCGAAGCTCAAATGATAAGAAACAACTTTTCACGGTCGACGTTCATCTCACAAACATACAAAAGCAGTTTCTTGAAGCAAAGATCAAAGGCAGAGAACAAATTACTAGCAGCCAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACCCTCCGCGATATCCTCCCCAACTTGATCAAAAAGGACAAGGCATCAATACTAGTGGAGACTATCAAGCAAGTGAAGGAGTTGAAGAAAAAAGCATCAAAACTAGAAGAAGATAATCATGGTACCTCAAAGGAGGTCAAGTTTCCAAGTGGAGTAGACAAATTGAGTTTGGAAAAGTGTAATGATAAGGAGGGTTTAGTGAAAGCTACATTAAGTTGTGAGGATAGACCAGGATTAATGTCTTCTATAGCAAGAGCATTAGGGTCAATGAAAGCCAAAGTTGTAAAAGTTGAGATGGTGACAGTAGGTGGAAGAAACAGAAGTGTGTTATGGGTGCAAGGTATTGAAAATGAAGGTTTGGGGATGCTTAAGAGTACTTTAAAAGTTGTCATGCATAAGCCAAGCTCTAAGATGAGACGGTTTACTCAATAA 651 0.3902 MVLLRQGMQHVRNYYNSEAQMIRNNFSRSTFISQTYKSSFLKQRSKAENKLLAAKKHSEAEKRRRMRINGQYDTLRDILPNLIKKDKASILVETIKQVKELKKKASKLEEDNHGTSKEVKFPSGVDKLSLEKCNDKEGLVKATLSCEDRPGLMSSIARALGSMKAKVVKVEMVTVGGRNRSVLWVQGIENEGLGMLKSTLKVVMHKPSSKMRRFTQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1588 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Tpr2g1588 216 PANTHER TRANSCRIPTION FACTOR BHLH30 9 214 IPR045847 GO:0003700|GO:0006355
Tpr2g1588 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 118 IPR036638 GO:0046983
Tpr2g1588 216 SUPERFAMILY ACT-like 141 205 IPR045865 -
Tpr2g1588 216 Pfam Helix-loop-helix DNA-binding domain 56 101 IPR011598 GO:0046983
Tpr2g1588 216 CDD ACT_UUR-ACR-like 143 193 - -
Tpr2g1588 216 Coils Coil 91 118 - -
Tpr2g1588 216 Gene3D - 139 206 - -
Tpr2g1588 216 Gene3D - 52 122 IPR036638 GO:0046983
Tpr2g1588 216 PANTHER TRANSCRIPTION FACTOR BHLH131 9 214 - -
Tpr2g1588 216 SMART finulus 58 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1588 Tpr-Chr2 18699907 18701131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1588 51 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.012 4.05e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g1588 HLH 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1588 - - gmx:102667782 295.049