Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1546 ATGGCATCAGAAAGTAAAGTAGTAGAGCATCCTAAGAAGGCATTTGGATGGGCAGCTAGAGACACTACTGGTGTTCTCTCCCCTTTCAATTTTTCAAGAAGGGAAACAGGTGAGAAAGATGTAGCATTCAAGGTGTTGTATTGTGGGATATGTCACACTGATCTTCATATGATACACAATGAATGGGGCAATTCAATCTATCCATTAGTTCCAGGGCATGAACTTGTGGGTGTAGTAACTGAAGTGGGAGGCAAAGTAGAAAAGTTTAAAGTTGGAGACAAAGTAGGTGTGGGATACATGGTTGATTCATGCCGGTCGTGCGAAAATTGTGATGAAAATCTTGAGAATTATTGTCCCCAACATACAGTTACATGTGGTGCCAAGTATCGCGATGGCACCATTACATATGGAGGTTACTCCGACTCAATGGTTGCAGACGAGCACTTTGTGATCCTTATTCCTGACAACTTACCTCTTGATGTTGCCGGTCCTCTCCTTTGTGCTGGTGTTACAGTGTATAGTCCTCTTAGGCATTTTGGACTCGACAAACCTGGTATGAATATAGGCGTTGTTGGTCTTGGTGGACTCGGTCATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCTAATGTTACAGTCATTAGTACATCGCCAAGCAAAGAAAAGGAAGCAATTGAACACTTAGGAGCTGACTCGTTTCTAATAAGTCGCGACCCAGATCAAATGCAGGCTGCAACCGGTACTTTGAATGGTATTATTGACACAGTTTCTGCGAGTCATCCTATCTCACAACTGATTGGTTTATTGAAAACCAATGGAAAACTTGTAATGGTTGGTGGCGTCGCAAAGCCACTAGAGCTTCCTGCATTTTCTTTACTTGGAGGGAGAAAGTTGGTAGCCGGAAGTTTGATCGGAGGGATAAAAGAGACTCAAGAAATGATTGATTTTGCGGCAGAACACAATGTAAAGCCTGAGATTGAGATCGTTCCTATTGATTATGTCAACACGGCAATGGAGCGTCTTGCTAAAGCAGATGTGAAGTATCGTTTCGTGATTGATATTGGAAACTCACTGAAAGAAAGCACTTAA 1089 0.4252 MASESKVVEHPKKAFGWAARDTTGVLSPFNFSRRETGEKDVAFKVLYCGICHTDLHMIHNEWGNSIYPLVPGHELVGVVTEVGGKVEKFKVGDKVGVGYMVDSCRSCENCDENLENYCPQHTVTCGAKYRDGTITYGGYSDSMVADEHFVILIPDNLPLDVAGPLLCAGVTVYSPLRHFGLDKPGMNIGVVGLGGLGHMAVKFAKAFGANVTVISTSPSKEKEAIEHLGADSFLISRDPDQMQAATGTLNGIIDTVSASHPISQLIGLLKTNGKLVMVGGVAKPLELPAFSLLGGRKLVAGSLIGGIKETQEMIDFAAEHNVKPEIEIVPIDYVNTAMERLAKADVKYRFVIDIGNSLKEST* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1546 362 Pfam Alcohol dehydrogenase GroES-like domain 39 151 IPR013154 -
Tpr2g1546 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 323 IPR036291 -
Tpr2g1546 362 CDD CAD1 15 353 - -
Tpr2g1546 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Tpr2g1546 362 Gene3D - 168 324 - -
Tpr2g1546 362 SUPERFAMILY GroES-like 21 185 IPR011032 -
Tpr2g1546 362 Pfam Zinc-binding dehydrogenase 195 318 IPR013149 -
Tpr2g1546 362 PANTHER ALDEHYDE REDUCTASE 4 361 - -
Tpr2g1546 362 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 4 361 - -
Tpr2g1546 362 Gene3D - 17 354 - -
Tpr2g1546 362 SMART PKS_ER_names_mod 24 352 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1546 Tpr-Chr2 18245541 18247544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1546 12 359 Monolignol Biosynthesis Gene Families AT4G37990 69.540 6.64e-168 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1546 - K23232 gmx:100816901 575.474