Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1532 ATGAAGATGGGACGTGCCATGAGTAAAAAGTTTCAATTGTTTTTGTGGTTTAGAATGGCTTTGCAACTATGTTTCATGTTTGGTGCCTCTTCTGAGCATATATCTTTCAGAAGAAGCTTAAGTAATGTTCAATCTCCAGTCACCATTGTGATTAATCAAATTCAAAGTTCTCCACAGGTGGTGATTAGCAATGGCATCTTTACCCTCACATTGGCAAATCCTGGGGGGTATATCACAGGAATATCATATTCTGGAATTGAAAATGTACTTGAAGGTGGAAATGAAGATATTGATAGAGGGTACTTTGACGTTGTTTTTGGCAAAACTTTTCAAAGAGTTCACGGGACAAGTTTCACCGTCATAACAAGGAATGAGAATATAGCAGAGGTTTCATTTTTAAGGAAATGGCAACCCTCAGACAGTTCAAGTGTCCCTATAAACATAGACCAAAGGTACATAGTACGAAAAGGCGATTCAGGATTTTATACTTACGTGATATTTGATCGACCAACAGGATTTCCTGCTATCTCAGTTAGTCAAATAAGGACCGTTTTTAAGCCCAAAGAAAGCTTGTTCAACTATATGGCCGTATCAGATATTATACAAAGAAAAATGCCAGAAATGAAAGATAGAGAAACTGGTCAACCTTTAGCATTTCCTGAAGCAGTGCTCTTAACAAATCCATCTGATTCACAATTTAAAGGAGAAGTGGATGATAAATACCAATACTCAACTGAGAACCAATACAACCAAGTAAATGGATGGATTACTGCAGATTCTGAAAAGCCCGTGGGCTTCTGGATCATAACACCAAGTAATGAGTTCCGAAATGGTGGGCCTGTTAAGCAAGACCTCACATCTCATGTCGGCCCAATTTGCCTCTCTATGTTTGTGAGCACTCACTATGCTGGCAAAACGGTAGCTATAGAATTGAAACAAGGAGAAGCTTATAAAAAGGTCTTTGGCCCTATTTTTGTTTACTTGAATACTGCACCAAGTAAGGATAAATTCAAATCTCTATGGACAGATGCTAAACAAAAGCTAGCAAATGAAGTCAAAAGTTGGCCTTATAATTTCGTTCAATCAAAAGATTTCATTCCATCTAATCAACGGGGAACTCTATCGGGACATTTACAAGTCAAAGACGGGGCAAACAAACCTCAAAATGCTAACAATGCTTACATCGGTCTAGCATTGCCTGGACCTGCAGGATCATGGCAGAGTGAAAGCAAGGGTTATCAATTTTGGATCCGATCAGATCAAAATGGAAACTTTCTTATAAATAATATTGTACCTGGGACATACAACTTATTTGCATGGGTTCCTGGCTACATTGGAGATTATATTTATAAAGATCAAATTACAATTAAACCAGGAAGCAAAATCAACTTGAATTCACTTGTATATAATCCTCCAAGAAATGGCCCAACTCTTTGGGAAATTGGCATTCCAGATCGTTCAGCCGGCGAATTTTATGTACCAAACCCTTACCCTAACCTCATAAACAAATTATACGTGAACGACAACAAAGACAGGTATAGGCAATACGGGATATGGAATCGTTACACCGATTTATATCCCAAAAACGATCTTGTTTACAAGGTTGGTGTTAATGACTGGAAAAAGGATTGGTTTTTTGCTCATGTTCCAAGGATTGTAGGAAATAAAACATTCCAAGCAACTACATGGAGTGTTGTATTTAAACTTGATAGTGTAGTGCGCGGAAACTATACATTACAATTGGCCCTTGCTAGTGCCTCTAATGCTGAAGTTCAGGTTTGGTTCAATAAGGTGAGCGCTAATCCTTTCTTCACGACAAAGCGAATAGGTGATGACAACGCGGTACCAAGGCATGGAATTCATGGATTATATTGGTTGTTTACCATAGAAGTACCTAGTATTAATTTGGTGAAAGGAATTAATACGGTATATTTGAGACAACCAAGATTTCAATCATTATTTCAAGCAGTTCTATACGATTATATCCGTTTAGAGAGTCCACCAACTACCTTAAATGTTTGA 2022 0.3783 MKMGRAMSKKFQLFLWFRMALQLCFMFGASSEHISFRRSLSNVQSPVTIVINQIQSSPQVVISNGIFTLTLANPGGYITGISYSGIENVLEGGNEDIDRGYFDVVFGKTFQRVHGTSFTVITRNENIAEVSFLRKWQPSDSSSVPINIDQRYIVRKGDSGFYTYVIFDRPTGFPAISVSQIRTVFKPKESLFNYMAVSDIIQRKMPEMKDRETGQPLAFPEAVLLTNPSDSQFKGEVDDKYQYSTENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLSMFVSTHYAGKTVAIELKQGEAYKKVFGPIFVYLNTAPSKDKFKSLWTDAKQKLANEVKSWPYNFVQSKDFIPSNQRGTLSGHLQVKDGANKPQNANNAYIGLALPGPAGSWQSESKGYQFWIRSDQNGNFLINNIVPGTYNLFAWVPGYIGDYIYKDQITIKPGSKINLNSLVYNPPRNGPTLWEIGIPDRSAGEFYVPNPYPNLINKLYVNDNKDRYRQYGIWNRYTDLYPKNDLVYKVGVNDWKKDWFFAHVPRIVGNKTFQATTWSVVFKLDSVVRGNYTLQLALASASNAEVQVWFNKVSANPFFTTKRIGDDNAVPRHGIHGLYWLFTIEVPSINLVKGINTVYLRQPRFQSLFQAVLYDYIRLESPPTTLNV* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1532 673 Pfam Polysaccharide lyase family 4, domain II 391 464 IPR029413 -
Tpr2g1532 673 Pfam Rhamnogalacturonate lyase family 44 237 IPR010325 -
Tpr2g1532 673 CDD RGL4_N 56 336 - -
Tpr2g1532 673 SUPERFAMILY Starch-binding domain-like 366 466 IPR013784 GO:0030246
Tpr2g1532 673 CDD RGL4_C 479 665 - -
Tpr2g1532 673 Gene3D - 475 665 - -
Tpr2g1532 673 Gene3D - 366 466 - -
Tpr2g1532 673 SUPERFAMILY Galactose-binding domain-like 474 665 IPR008979 -
Tpr2g1532 673 CDD RGL4_M 370 467 IPR029413 -
Tpr2g1532 673 Pfam Polysaccharide lyase family 4, domain III 477 664 IPR029411 -
Tpr2g1532 673 SUPERFAMILY Galactose mutarotase-like 55 332 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tpr2g1532 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 669 - -
Tpr2g1532 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 669 - -
Tpr2g1532 673 Gene3D - 52 343 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1532 Tpr-Chr2 18112978 18120356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1532 59 667 Polysaccharide Lyase AT1G09890 52.894 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1532 K18195 - gmx:100781089 830.861