Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1526 ATGGGAAGGGGGAAGATTGTGATAAGAAGGATCGACAATTGTACAAGTAGGCAAGTGACTTTCTCAAAGAGGAGAAAAGGATTGATCAAGAAAGCTAAAGAGTTAGCAATCTTATGTGATGCACAAGTTGGACTTTTTATATTCTCCAGCACTGGAAAGCTTTATGAATATGCAAATACCAGCATGAAATCAGTGATTGAGAGATATAACAGTTGCAAGGAAGATCAACAAGTGACAAATCCAGATTCTGAACTCAAGTTTTGGCAAAGGGAAGCAGACATTTTAAGGCAACAACTACAGGCTCTACAAGAAAATCATCAGCAAATGATGGGAGAACAGCTTTACGGTTTGAGTATCCGAAGCCTACAAGATTTAGAGAGTCAACTGGAACTGAGTCTCCAAGGAGTTCGCATGAAAAAGGAGAAAATTCTGACAGACGAAATCCAAGAGCTGAACCGAAAGGGAAGCCTAATCCATCAAGAAAATGTGGAACTCTATAAGAAGGTCTATGGGACATCAGATACGGCAGCAACCGCAACAAGCAAAAACGCATTTGGTCAATTTCCGTATGGTGTTTTCGAAGGAGGAGATTGTCCACAAACATTATTTAACCTTCAGTTATGTCTACCTGAGCAAGAACAGTACTGTGAAACCTCAGGCAGTGGAAGTGCAACAAAATGA 681 0.4038 MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLFIFSSTGKLYEYANTSMKSVIERYNSCKEDQQVTNPDSELKFWQREADILRQQLQALQENHQQMMGEQLYGLSIRSLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGSLIHQENVELYKKVYGTSDTAATATSKNAFGQFPYGVFEGGDCPQTLFNLQLCLPEQEQYCETSGSGSATK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1526 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g1526 226 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g1526 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g1526 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g1526 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g1526 226 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Tpr2g1526 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g1526 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 - -
Tpr2g1526 226 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 170 - -
Tpr2g1526 226 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Tpr2g1526 226 Coils Coil 85 112 - -
Tpr2g1526 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g1526 226 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g1526 226 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1526 Tpr-Chr2 18067011 18074369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1526 1 215 MADS-box Gene Family AT4G37940 61.574 1.59e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g1526 K-box 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1526 K09264 - gmx:100795778 314.309