Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1525 ATGTCTCACCGGAAATTTGAGCACCCTAGACACGGTTCTCTCGGCTTTCTCCCAAGGAAACGAGCTTCACGTCATCGTGGAAAAGTGAAAGCCTTTCCAAAAGACGACCCCACCAAACCATGCAGGTTGACTGCTTTTGTTGGCTACAAGTCTGGGATGACCCATATAGTTAGGGAGGTGGAGAAACCTGGATCAAAGCTTCATAAGAAGGAGACATGCGAAGCTGTCACCATCATTGAAACTCCTCCAGTTGTTGTTGTTGGAGTGGTGGGATACGTGAAGACACCACGAGGCCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTTAGTGAAGATATCAAGCGCCAATTTTACAAGAACTGGTGCAAATCAAAGAAGAAAGCTTTTACCAAATATACCAAGAAATATGAAACTGACGAAGGAAAGAAAGATATTCAAACTCAGCTTGAGAAATTGAAAAAGTATGCCACTGTCATCCGTGTTCTTGCTCATACTCAGATAAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATGGAGATCCAAGTTAATGGTGGAACAGTAAGCCAGAAGGTGGACTATGCATATGGTTTCTTTGAAAAGCAAATCCCTGTTGATGCTGTTTTTCAAAAGGATGAGATGATAGATATCATTGGAGTGACTAAAGGTAAAGGTTATGAAGGTGTGGTAACTCGTTGGGGCGTCACTCGCCTTCCACGAAAGACACACAGAGGTCTCAGGAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACAGTTGCCAGGGCTGGGCAGAATGGATATCATCATCGTACTGAGTTGAATAAGAAGATCTACAAGGTTGGCAAGACTGACCAAGAGTCACATACAGCCATCACTGAATTTGACAGGACTGAGAAGGATATTACGCCTATGGGTGGATTTCCTCATTATGGTATTGTGAAGCACGATTATCTTATGATCAAGGGATGCTGTGTTGGACCGAAGAAGCGGGTTGTCACTCTTCGTCAGTCACTTCTCAAGCAGACATCTCGATTGGCTCTTGAAGAGATCAACCTGAAGTTCATCGACACCTCCTCCAAGTTTGGACATGGCCGCTTCCAGACTACCCAGGAGAAACAAAAGTTTTATGGTCGGTTGAAGGCGTAA 1170 0.4453 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTAFVGYKSGMTHIVREVEKPGSKLHKKETCEAVTIIETPPVVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKRQFYKNWCKSKKKAFTKYTKKYETDEGKKDIQTQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVSQKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTDQESHTAITEFDRTEKDITPMGGFPHYGIVKHDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEINLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1525 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tpr2g1525 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Tpr2g1525 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Tpr2g1525 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Tpr2g1525 389 Gene3D - 83 207 - -
Tpr2g1525 389 MobiDBLite consensus disorder prediction 1 34 - -
Tpr2g1525 389 Gene3D Translation factors 44 385 - -
Tpr2g1525 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Tpr2g1525 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1525 Tpr-Chr2 18059653 18063968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1525 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 86.528 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1525 K02925 - gmx:100792174 726.857