Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1515 ATGGAGCTTTCTCAACTTGGTTTTCTTGAGGAGCTACTAGCTCCAAGAAAAGACACATGGAATGCTTTATCACCTGGTTTGAATGAACTACTACTCCCTAATGGTTGGAACTTTGACTCATTTGATGAAAATCTTCTCATAAATCCATCTTTAAATCCATCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCTGCTTCAGCATCATACCCTTTTGTTGATGGGTTTTCAGTGCCAGAGCTTGATGATTCAGCACCAATTTTACCTCATGAAAGTGTTGAAGAGTTTGGTTTTGTTGGAAGTGAGAACAAGAGTTTGGAACAAGGTGAAATTAGTTGCAAAGTTGAGGAACAAGTGAGTGAGATTCCTGTTTTTAATATGGGTTTGTGTGGTGAGAAAAAAGCTAAGTCTAAAAGGGTTGAAGGACAGCCTTCAAAGAATCTTATGGCTGAAAGAAGGAGAAGAAAGAGGTTGAATGATAGACTTTCCATGCTTAGGTCAATTGTCCCTAAAATCAGCAAGATGGACAGGACATCAATTCTTGGAGATACAATTGATTACATGAAAGAGCTTCTAGAAAGGATTAATAAGTTGCAAGAAGAAATGGATGAAGAAGGAACAAATCAAATAAACCTTTTGGGAATTTCTAAAGAGTCAAAGCCAAATGAAGTAATGTTTGATGTTGAGAGGAGAGACCAAGACACAAGGATTAGTATATGCTGTGCTACAAAGCCAGGATTATTACTATCAACTGTGAACACATTGGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTAAATGGTCAGAGAAATTGTATGAATCCTGAAGAGATAAAGCAATCCCTATTCAGGAATGCAGGTTATGGTGGGAGATGTCTCTAG 957 0.3762 MELSQLGFLEELLAPRKDTWNALSPGLNELLLPNGWNFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDAASASYPFVDGFSVPELDDSAPILPHESVEEFGFVGSENKSLEQGEISCKVEEQVSEIPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERINKLQEEMDEEGTNQINLLGISKESKPNEVMFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVNGQRNCMNPEEIKQSLFRNAGYGGRCL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1515 318 CDD ACT_UUR-ACR-like 244 285 - -
Tpr2g1515 318 Gene3D - 141 215 IPR036638 GO:0046983
Tpr2g1515 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 215 IPR036638 GO:0046983
Tpr2g1515 318 Pfam Helix-loop-helix DNA-binding domain 157 200 IPR011598 GO:0046983
Tpr2g1515 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Tpr2g1515 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 318 - -
Tpr2g1515 318 SMART finulus 157 206 IPR011598 GO:0046983
Tpr2g1515 318 Coils Coil 190 217 - -
Tpr2g1515 318 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1515 Tpr-Chr2 17924582 17926840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1515 11 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.349 3.24e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g1515 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1515 - - gmx:100806571 511.916