Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1489 ATGGCAACTTTAGAATCAGCCATAATAACTGTATTATTCACACCTCAACGTTTTTCAAATAACTACCATTTCCTACCTAAATCACACGATTCCGTTAAATTCCATTCTTCTTCTTCTTCTTCATCTTCCCTTTTCTCTCACAAACTTCACTTTTCTTCTTCTTCTTCTTCCTCCAATTCCCGAACACTCTGCTTTGCTTTACAAGAGGTAACAGAGGCAGCAATTCAAGACGATAAAACAGAGCCATTAAACAACGTTAAGAACAAGCTTTGTGTTTTTAACTTACCTTGGTCTCAGTCTGCACCAGACATCAAGGACCTCTTCGCCCAATGCGGAACTGTAATCTCCGTCGAGTTGATTATAAAGAGCAAAGAGGGGAAGGGAAAAGGTTATGCATTTGTTACTATGGATACAGGAGAAGAGGCTCAGGCTGTTGTTGATAAATTTAATGGTCATGAAATATCAGGCCGGATAATAAGGGTAGAGATTGCAAAGAGATTAAAGAAACCTCCTCCTCCTCCACCTCCTTCAGGTTCACCTTCTAGCGATGCACGCTATGTAATTTATGCTTCCAACCTTGCATGGAAAGCAAGATCTACACATCTCAAAGACATCTTCACTGAGAATTTCAAAGAACCAGTTTCAGCCAGGGTTGTTTTTCAGAACGCTGATGGGAGATCTGCTGGGTATGGATTTGTTTCTTATCATACAAAGGAGGAAGCAGATGCTGCTGTTTCTGCTTTGGAAGGGAAGGAGTTAATGGGACGACCACTTCGCGTAAAAATAAGTGAAAAGAAGGTTAAAAAAGCTGAAAGTGAAGAAGTTGAAGAGAAAATTGCTGCAATTGAAGAAAGTGAAGAGCAAATTGCTGAAAGTGGTGAAGGTGGTGAAAAGCAAGTTGTCAACGCTCAATTGGAAGAGTCATAA 927 0.4024 MATLESAIITVLFTPQRFSNNYHFLPKSHDSVKFHSSSSSSSSLFSHKLHFSSSSSSSNSRTLCFALQEVTEAAIQDDKTEPLNNVKNKLCVFNLPWSQSAPDIKDLFAQCGTVISVELIIKSKEGKGKGYAFVTMDTGEEAQAVVDKFNGHEISGRIIRVEIAKRLKKPPPPPPPSGSPSSDARYVIYASNLAWKARSTHLKDIFTENFKEPVSARVVFQNADGRSAGYGFVSYHTKEEADAAVSALEGKELMGRPLRVKISEKKVKKAESEEVEEKIAAIEESEEQIAESGEGGEKQVVNAQLEES* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1489 308 Coils Coil 265 288 - -
Tpr2g1489 308 Gene3D - 169 279 IPR012677 -
Tpr2g1489 308 Gene3D - 66 168 IPR012677 -
Tpr2g1489 308 SMART rrm1_1 187 261 IPR000504 GO:0003723
Tpr2g1489 308 SMART rrm1_1 89 162 IPR000504 GO:0003723
Tpr2g1489 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Tpr2g1489 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Tpr2g1489 308 PANTHER CHLOROPLAST, PUTATIVE-RELATED 6 282 - -
Tpr2g1489 308 PANTHER OS02G0815200 PROTEIN 6 282 - -
Tpr2g1489 308 SUPERFAMILY RNA-binding domain, RBD 87 181 IPR035979 GO:0003676
Tpr2g1489 308 MobiDBLite consensus disorder prediction 285 308 - -
Tpr2g1489 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Tpr2g1489 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 259 IPR000504 GO:0003723
Tpr2g1489 308 SUPERFAMILY RNA-binding domain, RBD 168 269 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1489 Tpr-Chr2 17542246 17546984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1489 104 269 Eukaryotic Initiation Factors Gene Family AT4G34110 26.946 1.79e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1489 - - gmx:100793319 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1489 2 17542246 17546984 Tpr2g1489 2 17542246 17546984 ECH