Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g1489 | ATGGCAACTTTAGAATCAGCCATAATAACTGTATTATTCACACCTCAACGTTTTTCAAATAACTACCATTTCCTACCTAAATCACACGATTCCGTTAAATTCCATTCTTCTTCTTCTTCTTCATCTTCCCTTTTCTCTCACAAACTTCACTTTTCTTCTTCTTCTTCTTCCTCCAATTCCCGAACACTCTGCTTTGCTTTACAAGAGGTAACAGAGGCAGCAATTCAAGACGATAAAACAGAGCCATTAAACAACGTTAAGAACAAGCTTTGTGTTTTTAACTTACCTTGGTCTCAGTCTGCACCAGACATCAAGGACCTCTTCGCCCAATGCGGAACTGTAATCTCCGTCGAGTTGATTATAAAGAGCAAAGAGGGGAAGGGAAAAGGTTATGCATTTGTTACTATGGATACAGGAGAAGAGGCTCAGGCTGTTGTTGATAAATTTAATGGTCATGAAATATCAGGCCGGATAATAAGGGTAGAGATTGCAAAGAGATTAAAGAAACCTCCTCCTCCTCCACCTCCTTCAGGTTCACCTTCTAGCGATGCACGCTATGTAATTTATGCTTCCAACCTTGCATGGAAAGCAAGATCTACACATCTCAAAGACATCTTCACTGAGAATTTCAAAGAACCAGTTTCAGCCAGGGTTGTTTTTCAGAACGCTGATGGGAGATCTGCTGGGTATGGATTTGTTTCTTATCATACAAAGGAGGAAGCAGATGCTGCTGTTTCTGCTTTGGAAGGGAAGGAGTTAATGGGACGACCACTTCGCGTAAAAATAAGTGAAAAGAAGGTTAAAAAAGCTGAAAGTGAAGAAGTTGAAGAGAAAATTGCTGCAATTGAAGAAAGTGAAGAGCAAATTGCTGAAAGTGGTGAAGGTGGTGAAAAGCAAGTTGTCAACGCTCAATTGGAAGAGTCATAA | 927 | 0.4024 | MATLESAIITVLFTPQRFSNNYHFLPKSHDSVKFHSSSSSSSSLFSHKLHFSSSSSSSNSRTLCFALQEVTEAAIQDDKTEPLNNVKNKLCVFNLPWSQSAPDIKDLFAQCGTVISVELIIKSKEGKGKGYAFVTMDTGEEAQAVVDKFNGHEISGRIIRVEIAKRLKKPPPPPPPSGSPSSDARYVIYASNLAWKARSTHLKDIFTENFKEPVSARVVFQNADGRSAGYGFVSYHTKEEADAAVSALEGKELMGRPLRVKISEKKVKKAESEEVEEKIAAIEESEEQIAESGEGGEKQVVNAQLEES* | 309 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g1489 | 308 | Coils | Coil | 265 | 288 | - | - | |
Tpr2g1489 | 308 | Gene3D | - | 169 | 279 | IPR012677 | - | |
Tpr2g1489 | 308 | Gene3D | - | 66 | 168 | IPR012677 | - | |
Tpr2g1489 | 308 | SMART | rrm1_1 | 187 | 261 | IPR000504 | GO:0003723 | |
Tpr2g1489 | 308 | SMART | rrm1_1 | 89 | 162 | IPR000504 | GO:0003723 | |
Tpr2g1489 | 308 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 186 | 265 | IPR000504 | GO:0003723 | |
Tpr2g1489 | 308 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 88 | 166 | IPR000504 | GO:0003723 | |
Tpr2g1489 | 308 | PANTHER | CHLOROPLAST, PUTATIVE-RELATED | 6 | 282 | - | - | |
Tpr2g1489 | 308 | PANTHER | OS02G0815200 PROTEIN | 6 | 282 | - | - | |
Tpr2g1489 | 308 | SUPERFAMILY | RNA-binding domain, RBD | 87 | 181 | IPR035979 | GO:0003676 | |
Tpr2g1489 | 308 | MobiDBLite | consensus disorder prediction | 285 | 308 | - | - | |
Tpr2g1489 | 308 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 91 | 159 | IPR000504 | GO:0003723 | |
Tpr2g1489 | 308 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 188 | 259 | IPR000504 | GO:0003723 | |
Tpr2g1489 | 308 | SUPERFAMILY | RNA-binding domain, RBD | 168 | 269 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g1489 | Tpr-Chr2 | 17542246 | 17546984 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g1489 | 104 | 269 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.946 | 1.79e-12 | 65.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g1489 | - | - | gmx:100793319 | 253.832 |