Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1488 ATGGCTTCTCTTGGAAATCCAAAAGCCTGGGTTCCATATATGAACAACAAAGATTGTTCTCAAGGTTTTTGTAGCTTCTATTGTCCTCAATGGTGTTATGTAGTCTACCCTCCACCTCCTCCTTCACCCTTTGAATTCCCTGATGATGATTCAAGTACAAATTTCTCCCCTCTTGTTATAGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTAACTTACTACACCTTAATATCAAAGTACTGCGGCCGCAGAATATCATCATCGCAAAGTGAATCGCAGGAAACAAACGATGAATTAGAAGACAATCATCATCATAACCCTTCAATCCATGAGCCATGGCATGTTTCAACAAATGGCTTAGATGAAGCTTTGATTAAATCCATAACAGTTTGTAAGTACAAAAAGAATGATGGATTGGTTGATGTAACAGATTGTTCCGTTTGTCTCAACGAGTTTCAAGATGGTGAAAGTATTAGACTTTTACCTAAATGTAGCCATGCTTTTCATCTACCTTGTATTGATACATGGCTCAAATCTCACTCAAATTGTCCTCTTTGTCGCGCTACAATATTCGCCTTCAATGCTTCGAGTTCAAATGCAACACTTCATTTGCCGGTTCAAGTTACTGAACAATCTTCAAGGAATGAAGTTTCTTTAGAAAATCAACATTTGAATGAAATTTCAGCTGTTGAAAGAGACGGTGAATTGAATGTTGCGGAAGAAGTTCCAATTCCGAAGACTGAATTTCGCGCTTTAAGTGATTTAGGAAATTTAAGAGGAAGGCATAATGTGATTGAGATTAGAGATAATGAAAATTATCGTGAATCGATTCGAAGATCGGTTTCTATGGATCATTCATTTCAAAGTGGTCTTTCACTTGTTGAAGATGTTAATGTTATGCATATAAATCAAGAACAAGATTCTCAAGTTGAAAGTTCATCAAAGAGATTAAGAGGTGAAAGTGAAAGTAGTAAATCTAGCTATAGTAGAAAGATTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTCCTTAGTAGAAGTTGCAGAGGAAGGCTTGGAGTTTTGCCTATCTAA 1107 0.3622 MASLGNPKAWVPYMNNKDCSQGFCSFYCPQWCYVVYPPPPPSPFEFPDDDSSTNFSPLVIAIIGILASAFLLVTYYTLISKYCGRRISSSQSESQETNDELEDNHHHNPSIHEPWHVSTNGLDEALIKSITVCKYKKNDGLVDVTDCSVCLNEFQDGESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSSNATLHLPVQVTEQSSRNEVSLENQHLNEISAVERDGELNVAEEVPIPKTEFRALSDLGNLRGRHNVIEIRDNENYRESIRRSVSMDHSFQSGLSLVEDVNVMHINQEQDSQVESSSKRLRGESESSKSSYSRKILHCVLSPIAMKRSFSSGRFFLSRSCRGRLGVLPI* 369
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1488 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Tpr2g1488 368 MobiDBLite consensus disorder prediction 306 325 - -
Tpr2g1488 368 SMART ring_2 147 188 IPR001841 -
Tpr2g1488 368 CDD RING-H2_PA-TM-RING 146 189 - -
Tpr2g1488 368 SUPERFAMILY RING/U-box 127 194 - -
Tpr2g1488 368 Pfam Ring finger domain 146 189 IPR001841 -
Tpr2g1488 368 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 359 IPR044675 -
Tpr2g1488 368 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Tpr2g1488 368 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 359 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr2g1488 Tpr-Chr2 17537792 17539817 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1488 6 368 C3H Transcription Factor Family AT5G17600 41.979 6.77e-72 226
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1488 2 17537792 17539817 Tpr2g1488 2 17537792 17539817 ECH
Tpr2g1488 2 17537792 17539817 Tpr4g4703 4 55452043 55453833 PCT