Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1485 ATGGCCAAAAAGAAACAGAAAGACCCAAAACAAACCCCTCAAAACGACAACGTTTCAGCCCCTTCCAGCATTTTCGACACACTTTTTGCCAACGCGCCGGAACAAATCATCCCCACCGCCGCCTCTCTATTTTCCGATGAAAACCCCTTTAAGAGAAAGGCTTCGCAACCAGCTTCCATTTCCGACGTATCCGAAATAAGTGTCAGGAAGAAGAAGAAAGAGGAAAGCTCCGTGATTGATTCGAATTCTGCAATTGAAGTTTCAGAGAAGAAGAAAAAGAAGAAAAGTGGTTCAGATGAAGGGAAAGAGAAAGAAAAAGAGCTTAATTTGGATGTAGAAACGATTGGGAAGAAGAAGAAGAGGAAAAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTGAGGGAGGGGATAAAGATGAAAAAGTTGGGAATAAGAGAAAATTGCGCGATAATCCGGCGGATATGTTGGTTTCAAAGGAAGGTTTTGATGACGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTTAAGGTGAAAAAGAAGACTTTGTTGAAGGAGTTTAAGCAATTTGGGGAGGTTGAATCTGTTAGGATTCGTTCTGTTCCTTTAAAAGATACCAAAAAGCCTAGAAAGGGAGCTATCCTTTCGAAGCAGATCGATGAATCGGCTGAAAGTGTCAATGGTTACGTTGTTTTCAAAACAGAGGAGTCTGCTCAGGCTTCTTTGGCTCACAACATGACTGTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACTTAAAGGGGATAAATCTTCGCATTATGATAATAAGAGAACTGTTTTTGTGGGCAATCTCCCGTTTGATGTGAAGGATGAAGAACTTTATCAGCTATTTAGTAGTATACCCAATCTAGAATCAAGTGTAGAAGCTGTTAGAGTTGTCCGAGATCCTCATCTTAATGTTGGAAAGGGAATTGCGTATGTGCTATTTAAAACAAGGGAAGCTACCATTTCCGTTGTTAAGAAACGGTCCTTGAAGCTGCGAGATCGAGAATTGAGACTCACTCATGCCAAAGCAGATGCTAGTGCTACGCCATCTAAAAGGCCGTACTCTCCAGCGGCACGACTCAGCCATGGCAAACCAGGTGCTACCCCATCTAAAAGGCCATACTCTCCAGCAGCACAAGCTCATAGTACCCCTGCAAAGAGGTTTTCAGGGGATTCAAGGTCTCCTTCAAGCATTCAGAACAGGTCAAACAGCAAAGGTACTGCATCTTATCAGGGTCTGCGTGCAACCAAAACTGATGTCCACAAGAAAAGTCACGGTGCAGAAAAACCAAAAGAGCGCACAAAGAAAAGACCAACAGTAGCTGCCAGAAAGGCTAAAGCAAACATGCAGAAGGAGGGTGGTACACCAAAGGGTGCTACACCAAAACAAGCAGGGTTCAAACGCAAGTTTGATAGTCGCACTCCTGATAGCTCCCGACGAGTTAACAAAACCCAAAAGAAGAGGTAG 1539 0.436 MAKKKQKDPKQTPQNDNVSAPSSIFDTLFANAPEQIIPTAASLFSDENPFKRKASQPASISDVSEISVRKKKKEESSVIDSNSAIEVSEKKKKKKSGSDEGKEKEKELNLDVETIGKKKKRKRDEVEKEWEEKKYGIVEGGDKDEKVGNKRKLRDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKQFGEVESVRIRSVPLKDTKKPRKGAILSKQIDESAESVNGYVVFKTEESAQASLAHNMTVVEGNHIRVDRACPPRKKLKGDKSSHYDNKRTVFVGNLPFDVKDEELYQLFSSIPNLESSVEAVRVVRDPHLNVGKGIAYVLFKTREATISVVKKRSLKLRDRELRLTHAKADASATPSKRPYSPAARLSHGKPGATPSKRPYSPAAQAHSTPAKRFSGDSRSPSSIQNRSNSKGTASYQGLRATKTDVHKKSHGAEKPKERTKKRPTVAARKAKANMQKEGGTPKGATPKQAGFKRKFDSRTPDSSRRVNKTQKKR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1485 512 MobiDBLite consensus disorder prediction 488 505 - -
Tpr2g1485 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 367 IPR000504 GO:0003723
Tpr2g1485 512 CDD RRM1_RBM34 175 265 IPR034220 -
Tpr2g1485 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 219 IPR000504 GO:0003723
Tpr2g1485 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 360 IPR000504 GO:0003723
Tpr2g1485 512 Gene3D - 274 375 IPR012677 -
Tpr2g1485 512 SUPERFAMILY RNA-binding domain, RBD 281 387 IPR035979 GO:0003676
Tpr2g1485 512 SUPERFAMILY RNA-binding domain, RBD 168 276 IPR035979 GO:0003676
Tpr2g1485 512 SMART rrm1_1 176 265 IPR000504 GO:0003723
Tpr2g1485 512 SMART rrm1_1 287 363 IPR000504 GO:0003723
Tpr2g1485 512 PANTHER RNA-BINDING PROTEIN 34 45 511 - -
Tpr2g1485 512 MobiDBLite consensus disorder prediction 364 512 - -
Tpr2g1485 512 Gene3D - 171 273 IPR012677 -
Tpr2g1485 512 CDD RRM2_RBM34 287 363 IPR034221 -
Tpr2g1485 512 MobiDBLite consensus disorder prediction 409 438 - -
Tpr2g1485 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 269 IPR000504 GO:0003723
Tpr2g1485 512 MobiDBLite consensus disorder prediction 42 130 - -
Tpr2g1485 512 MobiDBLite consensus disorder prediction 1 22 - -
Tpr2g1485 512 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 511 - -
Tpr2g1485 512 MobiDBLite consensus disorder prediction 65 130 - -
Tpr2g1485 512 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1485 Tpr-Chr2 17501798 17506187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1485 177 366 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 4.09e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1485 K14837 - gmx:100784494 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1485 2 17501798 17506187 Tpr2g1485 2 17501798 17506187 ECH