Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1477 ATGGATGTGGCTAGTTCAAGCAAAACCAAGGAAGAAGAAGATGATGGTATTGATATTATGGATGATAGGCTTGATAAGTTGTTAAGTAATATTCAACAACCTGAATTGTCTCAGGAACAGATCATAATCAATGATCAATTGCAGCAAGATGAGTTGCTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAACCTTGATTCATGGAAAGGCCTGCGCTGTTTTCAGATACACATAAACATTGATATTTTGGGTGAAATAGGCATTACTGCTAAGATGAACGCTGTCAATGAAGTTGAAACTATTAGCGGCAATTCAGATGATTTCTTATATTCTTTCAAAGTTCAATACCTTCCACCGATTGTTTTGACATGTTTATTACCTAAGTCGTATCCGAGCCACCAACCACCTATATTTACAATCTCTGTCAAGTGGTTGGAATCTGCGAAGATTTTGAGTTTATGTTCCATGTTGGATTCAATATGGACAGAACAGCAAGGGCAAGAAGTAATTTACCATTGGGTAGAATGGTTACATAGTTCTTCACTTTCTCATCTGGGATTTGATGAGGAGATTAGACTAGGTCCTTACGGTACGAATCGTGTTGCGGACGCGCGTGTGGTTTCAGGAATTAGATGCATTGATGCTGATATTCCTTTTTTAAAAAGTTACAACAATGAGAGACGCCATCAGAATTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACCGAGTTCGTCCAGTTACCATGCAAACATTTCTTCTGCCGCAAATGCTTGCAGACCTTTACTCAGATTCATGTAAAAGAAGGAAACGTTAGTAATCTTCAATGTCTTGATGCAAAATGCAAGGACATGATTCCACCAGGCCTTTTAAAGCACTTTCTTGGTGACGAAGATTATGAACGTTGGGAATCAATGATGTTAGAGAAAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGAAGAAGACCAACATGCTCAATGCACTAAATGCTTTTTTAGCTTTTGCACCCTTTGCAGAGAACGACGCCATGTTGGCATAGCATGCATGACGCTAGAAATGAAGCTTCAGCTTCTACAGGATCGTCAAAATTCATCTAGATTAAAGGGAAATCAAAGGCAAATTGAACTTCAAAAGATCAATGAAATGCTCAGCGAGAGAGAAGTTCGCCGCGATTCCAAGTTGTGCCCGTATTGTGACATGGCGATTTCTCGAACTGAAGGTTGTAATAAAATGAAGTGTGGTAATTGTGGAGAGTACTTCTGTTACCGTTGTAACAAACCACTTGATGCATCAGATCCATATGGACATTTCAGGGACGAGGGGTCATGTGAATTGTTCCCACGAGAAATGATTGAGAACTGGCAGCAAGCACACATAAATCCTCGCCAGGAAATACAACAAATACATGCTGAACTCTTTCACCTCGGTGGCTCACCATGTCCTTGTTGTCGTCAATTTAATGTAAAGATGGGAAACAATAACCATATGTTATGTTGGGCATGCCAAAACCATTACTGCTACTTATGCAATCAGATTGTGAAGCGCGGCGATAAGCATTATGGACCAAAAGGTTGCAAACAGCACAGTGAGGGATAG 1650 0.3976 MDVASSSKTKEEEDDGIDIMDDRLDKLLSNIQQPELSQEQIIINDQLQQDELLVVESIYGENVFNLDSWKGLRCFQIHINIDILGEIGITAKMNAVNEVETISGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESAKILSLCSMLDSIWTEQQGQEVIYHWVEWLHSSSLSHLGFDEEIRLGPYGTNRVADARVVSGIRCIDADIPFLKSYNNERRHQNFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGNVSNLQCLDAKCKDMIPPGLLKHFLGDEDYERWESMMLEKTLASMSDVVYCPRCETPCIEEEDQHAQCTKCFFSFCTLCRERRHVGIACMTLEMKLQLLQDRQNSSRLKGNQRQIELQKINEMLSEREVRRDSKLCPYCDMAISRTEGCNKMKCGNCGEYFCYRCNKPLDASDPYGHFRDEGSCELFPREMIENWQQAHINPRQEIQQIHAELFHLGGSPCPCCRQFNVKMGNNNHMLCWACQNHYCYLCNQIVKRGDKHYGPKGCKQHSEG* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1477 549 SMART ibrneu5 308 366 IPR002867 -
Tpr2g1477 549 SMART ibrneu5 395 461 IPR002867 -
Tpr2g1477 549 ProSitePatterns Zinc finger RING-type signature. 257 266 IPR017907 -
Tpr2g1477 549 ProSiteProfiles TRIAD supradomain profile. 236 467 IPR044066 -
Tpr2g1477 549 ProSiteProfiles Zinc finger RING-type profile. 240 284 IPR001841 -
Tpr2g1477 549 Gene3D - 388 494 - -
Tpr2g1477 549 Pfam IBR domain, a half RING-finger domain 396 446 IPR002867 -
Tpr2g1477 549 Pfam IBR domain, a half RING-finger domain 308 366 IPR002867 -
Tpr2g1477 549 SUPERFAMILY RING/U-box 485 547 - -
Tpr2g1477 549 Pfam RWD domain 46 180 IPR006575 GO:0005515
Tpr2g1477 549 SUPERFAMILY RING/U-box 401 455 - -
Tpr2g1477 549 SMART RWD2001b 50 185 IPR006575 GO:0005515
Tpr2g1477 549 SUPERFAMILY UBC-like 45 180 IPR016135 -
Tpr2g1477 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 324 IPR013083 -
Tpr2g1477 549 SMART ring_2 498 527 IPR001841 -
Tpr2g1477 549 SMART ring_2 240 287 IPR001841 -
Tpr2g1477 549 SMART ring_2 328 416 IPR001841 -
Tpr2g1477 549 SUPERFAMILY RING/U-box 308 371 - -
Tpr2g1477 549 ProSiteProfiles RWD domain profile. 50 185 IPR006575 GO:0005515
Tpr2g1477 549 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 28 475 - -
Tpr2g1477 549 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 475 IPR031127 GO:0004842|GO:0016567
Tpr2g1477 549 SUPERFAMILY RING/U-box 235 319 - -
Tpr2g1477 549 Gene3D Ubiquitin Conjugating Enzyme 37 186 IPR016135 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1477 239 484 ARIADNE family AT2G31780 21.786 2.79e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1477 K11971 - gmx:100500662 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1477 2 17374132 17392906 Tpr2g1477 2 17374132 17392906 ECH