LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g1475	ATGGATGGAGCTAGCGGTGTCAGTGGCGGCGGAGAAGTTTCAGCCCAATTACCGGCGCCGACACCGATGCAAAACTCAAACGCGCCGCCACCGTTTTTGAGCAAAACGTATGATATGGTTGATGATTCTTCTACGGATGCGATAGTTTCTTGGAGCGCAACGAACAATAGTTTCGTTGTTTGGGACCCACCGGAATTCGCTAGGGACCTTTTGCCGAAGTATTTCAAGCATAATAACTTCTCAAGCTTCGTTAGACAGTTGAATACTTATGGTTTCAGGAAGGTCGACCCAGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTACTTAAGAGTATAACTCGACGAAAGCCTGCTCATGGTCCTAATAATCAACAGGCTCAGCAACCTCATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTCGGGAAATTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAGAATGTTCTGATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAGCAAACCACTGATGGCCAGCTACAAACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCCAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTGCAACAGCAAAATGACAGCAATAGGCGCATAACTGAAGTCAATAAAAAGCGGCGGCTCAAGCAGGATGGTATTGCCGAAACAACAGAGCGAGCTTCCCCTCCTGATGGACAAATTGTTAAGTATCAACCTCTGATGAATGAAACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACTCCTCGTGTAGAATCTTTTAGTAAAAACCCTGATAATTACTTGATTGGAGACGGTACATCACCGTCAAGTGCAATGGACAGTAGTAGCTCATCTAGCTGGAATTCCGGAGTAACTCTTCAAGAGGTTCCTCCATCTTCAGTGCAGTCTTCTCAATTTCCAGCTGCAACGGGGACTCAAGGACACATACCCTCGGCAGAAAATCCTGAAATTCTATCTGTACCTCAAGCTGCAGCTGCATCGGAAAATGTTATGAAAGATGGAGCACGTGCAGCACCAACTATTCCGACTTCTCAAGCTGATGTTATCATGCCTGATATACGTTCAATACCAGAGATTGTGCCAAGAAGTATTCTTGATATTCCTGAAGACAATTATATGGCTCCTGGGACAGATGATGGATTTATGGATCCGACATCACTTGAGTCATTTTCCCTTGATTTTGAAGATCTTTCACCCGGCGCAGACATTGATGATTTGTTAAACAATCCTATTTGGGATGATTTTTTGCAAACTTCAGCTCCAGAGGATCTTGAGACTAATGTTGACAAAATATCCAGAGGGAATGAGGTGCAACCAACAGAAAATGGATGGGACAATAACAATACTCAACACCTGGATCAACTAACAGAACAGATGGGTCTTCTTTCTTCTGATGTCAAAAGAATTTAA	1512	0.4438	MDGASGVSGGGEVSAQLPAPTPMQNSNAPPPFLSKTYDMVDDSSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGPNNQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTERASPPDGQIVKYQPLMNETAKAMLRKIMKWDTPRVESFSKNPDNYLIGDGTSPSSAMDSSSSSSWNSGVTLQEVPPSSVQSSQFPAATGTQGHIPSAENPEILSVPQAAAASENVMKDGARAAPTIPTSQADVIMPDIRSIPEIVPRSILDIPEDNYMAPGTDDGFMDPTSLESFSLDFEDLSPGADIDDLLNNPIWDDFLQTSAPEDLETNVDKISRGNEVQPTENGWDNNNTQHLDQLTEQMGLLSSDVKRI*	504

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr2g1475	503	MobiDBLite	consensus disorder prediction	229	245	-	-
Tpr2g1475	503	MobiDBLite	consensus disorder prediction	123	141	-	-
Tpr2g1475	503	MobiDBLite	consensus disorder prediction	293	346	-	-
Tpr2g1475	503	Coils	Coil	150	177	-	-
Tpr2g1475	503	SUPERFAMILY	"Winged helix" DNA-binding domain	28	121	IPR036390	-
Tpr2g1475	503	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	8	487	IPR027725	-
Tpr2g1475	503	SMART	hsfneu3	28	121	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Tpr2g1475	503	MobiDBLite	consensus disorder prediction	227	258	-	-
Tpr2g1475	503	MobiDBLite	consensus disorder prediction	121	141	-	-
Tpr2g1475	503	MobiDBLite	consensus disorder prediction	287	347	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g1475	Tpr-Chr2	17358059	17362569	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g1475	9	497	HSF	AT1G32330	54.980	3.29e-168	482

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Tpr2g1475		HSF_DNA-bind	4.9e-33	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g1475	K09419		-	gmx:100794897	741.11

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g1475	2	17358059	17362569	Tpr2g1475	2	17358059	17362569	ECH

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