Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1474 ATGGCTATGTACCACCACTACTACTCAAGCTCCCAATACAATGAGAAAGAAATTGGAGAACAACTTTGTTATATCCCACATGATGCACTACAAAATTTGGAATGGTACCCTACTTTTTCAGAAACCATGGAGAAAAGTTTGCAAGAAGATTTGAATTATTTGCTTTTTTGTGACACTCAAGAGAAAGAAACTCTCAAATTCAATCAATTGGGTGAAGGAATACCACAAGAAAATATGTCAAATGTTCAAATAAATCAAGAGGGTAATATTGATACAAGTTTGGCTAATATTCATATCAAGAATCATGAGAATCTACCGAAGAATAATGTGAAGTCTCAAAGTAAAGAGAAGGGTCTAAAAGTTAAGAAGAGTAAAGATAAGGGTCTCAAAGCAAAGAAGATAGATAATTATAAAGAAAGAATTTGTAGTCATTGTAAGACTAAGGACACTACTCAATGGAGGAATGGACCTTTGGGGAGAAATACTTTATGCAATGCTTGTGGATTAAGATTCAAGTCAAATCGGTTGATGGAAGGGTATAAACCTAGGGCAAGTTCAAATCTTGATATGATAAAAGAATTTAGATTTTCCCAGGAGATATAA 603 0.335 MAMYHHYYSSSQYNEKEIGEQLCYIPHDALQNLEWYPTFSETMEKSLQEDLNYLLFCDTQEKETLKFNQLGEGIPQENMSNVQINQEGNIDTSLANIHIKNHENLPKNNVKSQSKEKGLKVKKSKDKGLKAKKIDNYKERICSHCKTKDTTQWRNGPLGRNTLCNACGLRFKSNRLMEGYKPRASSNLDMIKEFRFSQEI* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1474 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 180 - -
Tpr2g1474 200 PANTHER GATA TRANSCRIPTION FACTOR 18 196 - -
Tpr2g1474 200 Pfam GATA zinc finger 142 177 IPR000679 GO:0006355|GO:0043565
Tpr2g1474 200 Gene3D - 131 193 IPR013088 GO:0006355|GO:0008270
Tpr2g1474 200 ProSiteProfiles GATA-type zinc finger domain profile. 136 174 IPR000679 GO:0006355|GO:0043565
Tpr2g1474 200 MobiDBLite consensus disorder prediction 106 125 - -
Tpr2g1474 200 CDD ZnF_GATA 141 192 IPR000679 GO:0006355|GO:0043565
Tpr2g1474 200 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 18 196 - -
Tpr2g1474 200 SMART GATA_3 136 186 IPR000679 GO:0006355|GO:0043565
Tpr2g1474 200 MobiDBLite consensus disorder prediction 109 125 - -
Tpr2g1474 200 ProSitePatterns GATA-type zinc finger domain. 142 167 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1474 Tpr-Chr2 17355024 17355626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1474 4 192 C2C2-Gata Transcription Factor Family AT2G45050 28.796 6.91e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr2g1474 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1474 - - mtr:MTR_7g446110 189.504