Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1471 ATGAGTTTTCAGGACATACAATCCGGCCGCCGAAACCTAACCAACGGCAAACAAGACCCGACGCAAGCGGTGGCTTCCGGCGTATTCCAGATCAACACCGCCGTTTCCACTTTTCAGAGACTCGTTAACACTCTCGGAACCCCCAAAGACACGCCAGAGCTTCGCGAGAAACTGCATAAGACGAGACTTCATATTGGACAATTGGTAAAGGATACTTCTGATAAACTTAAGCAAGCTAGTGAAATTGATCACCATGCTGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCAGCTGAGAGGGAGACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCAGCCATCCAGCTATACAGTCAGCGAAGCAGGTGTTAGTTCCGATAAAAGCCAAGAACAGCAGGCCCTTCTTGTGGAATCCAGAAGACAGGAGGTAATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATAGGTGAAGTGAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGACCAACATTGAGAATTCTCATGAAGCTACTGTCCAAGCAAAATCGCAACTTGTTCAAGCTTCAAAGACACAAAGATCAAATTCATCTTTGGCGTGCTTGCTTCTGGTGATATTTGGAATCGTGCTTCTCATCATCATCATTATTGTTGCTGCTTAG 807 0.4399 MSFQDIQSGRRNLTNGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHADVNATKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVQPSSYTVSEAGVSSDKSQEQQALLVESRRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGTNIENSHEATVQAKSQLVQASKTQRSNSSLACLLLVIFGIVLLIIIIIVAA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1471 268 Gene3D - 11 128 - -
Tpr2g1471 268 MobiDBLite consensus disorder prediction 1 20 - -
Tpr2g1471 268 Pfam SNARE domain 212 263 IPR000727 -
Tpr2g1471 268 SMART tSNARE_6 170 237 IPR000727 -
Tpr2g1471 268 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Tpr2g1471 268 Gene3D - 169 268 - -
Tpr2g1471 268 SMART SynN_4 8 122 IPR006011 GO:0016020
Tpr2g1471 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr2g1471 268 CDD SynN 18 135 IPR006011 GO:0016020
Tpr2g1471 268 PANTHER SYNTAXIN OF PLANTS PROTEIN 8 267 - -
Tpr2g1471 268 SUPERFAMILY t-snare proteins 18 230 IPR010989 GO:0016020|GO:0016192
Tpr2g1471 268 CDD SNARE_Qa 178 236 - -
Tpr2g1471 268 PANTHER SYNTAXIN 8 267 IPR045242 -
Tpr2g1471 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1471 Tpr-Chr2 17332327 17336369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1471 1 256 SNARE and Associated Proteins AT5G46860 76.923 1.84e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1471 - K08488 gsj:114391232 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1471 2 17332327 17336369 Tpr2g1471 2 17332327 17336369 ECH
Tpr2g1471 2 17332327 17336369 Tpr4g4719 4 55604823 55608805 PCT