Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1406 ATGGGTAAGAAAAACGGCGCCGTTTCAGCCAACGAACCAGTCGACGAACAACAAACCAATAACAACAACAACAACAGCGAACTCAAATCTTCGAAGAAGAACAAAAAGAACAAAAACAAACACGAAGAAAACACTCCCAAAAGAAAGCACGAAGAACTCAATCATCAAAACGACGCCGAATCGGAGAAGAAAAGTAAGAAGAAGAAAAAGCACAACAAATCAGATGAAAATGAATCAGCCAACGGTGTTGAGACGGTTACTGCATCTGATGAACCGATTACGGTTACTGGAAAGAACGCTGGAGATGAGAAATATGCGGCGGTTAAAACTTTTGTTGGTTCGGGACTTCCTGATAATGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCTTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCCGCTACTGGTTCAGGAAAAACACTTGCTTTTGGACTACCAGCTATTATGCATGTTTTGAACAAGCGGAAGAGTAAGGGTTCTTCCAAGGGTCGAAATCCTCTTTGCCTTATGCTCTCTCCGACAAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAGTCTTGTGGCGTGGAATCAGTTTGTTTGTATGGTGGAACCTCGAAAGGACCACAAATCTCTGCACTCAAATCTGGCGTTGATATTGTCATTGGAACCCCTGGTCGTATTCAAGATCTTGTTGAAATGGGTATCTGTCGTCTACAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAACCCTGTTAAAGTTGTTGTAGGGTCAGAGGATTTATCTGCCAATCATGATGTCATGCAGATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATTTGAAACCACACGAGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAAGCGGTGTCAATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGACATTCCAGATGTGGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACACGCAAATAAGGGACTTTCTGGGGAGCTTGTGAATGTTTTAAGAGAAGCAGGACAAGTTGTGCCAGACGATCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTACAAAAATAACATTTGACAGCTCTGATGATGAAGACTAA 1590 0.4182 MGKKNGAVSANEPVDEQQTNNNNNNSELKSSKKNKKNKNKHEENTPKRKHEELNHQNDAESEKKSKKKKKHNKSDENESANGVETVTASDEPITVTGKNAGDEKYAAVKTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTSKGPQISALKSGVDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKFETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHANKGLSGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSTKITFDSSDDED* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1406 529 PANTHER BNAA08G07020D PROTEIN 46 515 - -
Tpr2g1406 529 Coils Coil 25 45 - -
Tpr2g1406 529 CDD SF2_C_DEAD 330 462 - -
Tpr2g1406 529 Pfam DEAD/DEAH box helicase 132 301 IPR011545 GO:0003676|GO:0005524
Tpr2g1406 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 316 IPR014001 -
Tpr2g1406 529 Gene3D - 56 319 IPR027417 -
Tpr2g1406 529 MobiDBLite consensus disorder prediction 29 78 - -
Tpr2g1406 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 465 IPR027417 -
Tpr2g1406 529 Pfam Helicase conserved C-terminal domain 345 453 IPR001650 -
Tpr2g1406 529 Gene3D - 320 495 IPR027417 -
Tpr2g1406 529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 492 IPR001650 -
Tpr2g1406 529 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 262 270 IPR000629 -
Tpr2g1406 529 MobiDBLite consensus disorder prediction 1 90 - -
Tpr2g1406 529 CDD DEADc 125 317 - -
Tpr2g1406 529 SMART ultradead3 126 333 IPR014001 -
Tpr2g1406 529 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 515 - -
Tpr2g1406 529 Coils Coil 50 70 - -
Tpr2g1406 529 MobiDBLite consensus disorder prediction 11 28 - -
Tpr2g1406 529 SMART helicmild6 372 453 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1406 Tpr-Chr2 16429380 16435122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1406 108 461 Eukaryotic Initiation Factors Gene Family AT3G19760 33.146 7.74e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1406 K14811 - gmx:100806057 791.186