Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1402 ATGCAGAAAAATTCTGAAATTAATTTAAATGAACCGGCTTCAATCCAAGAACTTTCTGAGAATAATAGCATGGAACAACAACAAAAGGAGAATCTTGATAACATTGATGTGGCTGAGTCTGGTAGTAACGCCATTGTTGTAAACTCTAATGCAAATAATGGCTTAATTCAAGATCAGTTACTACCAGAAGAAAATCAGGCCGTCGCAAATAATGCCATAATTCAAGCTGAGCCGCTACCGGAGGAAAATCAGGCCGTCGCAAATAATGGCATAAATCATTCTGAGCCGCTACCGGAAGAAAATCAGGCCGTCGCAAATAATGGCATAAATCATGCTGAGCCGCTACCGGAGGAAAATCAGGCCGTCGCAAATAATGGCATAAATCATGCTGAGCCGCTACCGGAAGAAAATCAGGCCGTCGCAAATAGAGAGCGTAAAGAAAGGATTCCATGGACAGAAGATGAACACAGGTTGTTTCTGCAAGGACTAAACAAACATGGTAGGGCACGTTGGAAAGACATTTCAAAAGATTTTCTGCCCAGAAGAACCCCAACTCAAATTGCTAGTCATGCTCAAAAATACTTCAAACATCTGAAAGAAGTCGCGGGAAAAGAGAGGAAGAAAAGAAGAAGTATTCATGACGTGACTGTCGACAACAATGTTACAGTAGCTAGTCACCCTATTGAACAACAAACTGGGATTCCTTTGATCGAACAACAAAATGAAATTCCTAATTTGATCAGTCCCTCTATTGAACAACAGATTCCTTCAATTGAAGGACAAAATAAGATTTCTACTTTGGTTACTCATCCTGTTGAAAAACAAAATGTGAATATTTCTCCTCACAGCACAACCTTAAATGACAACAACATTGAAAACTTGGTCACTCCTCCCATTGAGCCATTTAAAGAAAAGGAGAGCCAACTAAAACTTGGGTACACATTTACGGTTGAGATTACACCTCAAAATATGAAGAATGTCCTTAAGGTGTGTGAATTGTTGGAGAAGAACTTAAAAAGTTGA 1023 0.3939 MQKNSEINLNEPASIQELSENNSMEQQQKENLDNIDVAESGSNAIVVNSNANNGLIQDQLLPEENQAVANNAIIQAEPLPEENQAVANNGINHSEPLPEENQAVANNGINHAEPLPEENQAVANNGINHAEPLPEENQAVANRERKERIPWTEDEHRLFLQGLNKHGRARWKDISKDFLPRRTPTQIASHAQKYFKHLKEVAGKERKKRRSIHDVTVDNNVTVASHPIEQQTGIPLIEQQNEIPNLISPSIEQQIPSIEGQNKISTLVTHPVEKQNVNISPHSTTLNDNNIENLVTPPIEPFKEKESQLKLGYTFTVEITPQNMKNVLKVCELLEKNLKS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1402 340 Pfam Myb-like DNA-binding domain 150 195 IPR001005 -
Tpr2g1402 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 199 IPR017930 -
Tpr2g1402 340 SMART sant 147 197 IPR001005 -
Tpr2g1402 340 PANTHER TRANSCRIPTION FACTOR SRM1 87 277 - -
Tpr2g1402 340 SUPERFAMILY Homeodomain-like 145 200 IPR009057 -
Tpr2g1402 340 CDD SANT 150 195 IPR001005 -
Tpr2g1402 340 PANTHER TRANSCRIPTION FACTOR KUA1 87 277 - -
Tpr2g1402 340 ProSiteProfiles Myb-like domain profile. 143 195 IPR001005 -
Tpr2g1402 340 Coils Coil 15 35 - -
Tpr2g1402 340 ProSiteProfiles SANT domain profile. 151 199 IPR017884 -
Tpr2g1402 340 Gene3D - 151 199 - -
Tpr2g1402 340 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 146 197 IPR006447 GO:0003677
Tpr2g1402 340 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1402 Tpr-Chr2 16392294 16394716 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g1402 Myb_DNA-binding 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1402 - - mtr:MTR_5g088010 149.443