Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1401 ATGGATCAATTGTCTCAAATTAATTTAAATGAACGGACTTCAATTCAAGACCCTTCTGAACGACAGAATGTTGACACTGATATGATTGAATCGGGTAGCAAGACCGTGATTGTAAATTCTAATGCAAAGAGTAGTTTAATTCGAGCAAAGTCGATACCAGAAGAAACTCAAGATGCCGCAAATAGAGCTGAGCCGATACCTGAAGAAACTCAGGCCGACGCAAATAGAGAGGAGAAAAAAAGGAAACATTGGAAAGAAGATGAGCATAGGCAGTTTTTGAAAGGGCTGCTAAAATATCAAAGAGGACAATGGAAAGAAATTTCAAAAGAATTTGTGACGACAAGATCACCAAGTCAAATTGCTAGCCATGCTCAAAAATATTTTGACCGCAACAAAGATGCAGTGAAAAAAGCAAGAAAGAAGAGAAGAAGTATTCATGACACAACCATCGACAACAATGGTAGATTAGTCATTCTCCCTGTTGAAAAACAAAATGAGATTCCTTCAATTGAACGACAACAAAAAGAGATTCCTTCTCACTGTACAACATTAAATGTGATTCCTTCGATTGAACAACAAAATAAAATTTCACCTTTGGTTACTCGTTCTTTTCACGACCAGTTTAATCTGGTATCTCATGACTCTCTCAATAGCGTGACAATGCTCATCACTGGGTCTGCTGGTAAACCTACACAAGAGTCCCACGACATAGGCGATGTCGGGTCTAGTACAATCAGTGGCATACCTAAGACTACCAATGATGCTCGCGTATTCTGTTTGTCTTACGCTATCACCAGTGTTCTTAAACAGTTTTACACTGGGATCATAAGGTGTGCAGGCAGGTTTACAGTTAAAGTAACCGTATTTCTTTAG 873 0.3872 MDQLSQINLNERTSIQDPSERQNVDTDMIESGSKTVIVNSNAKSSLIRAKSIPEETQDAANRAEPIPEETQADANREEKKRKHWKEDEHRQFLKGLLKYQRGQWKEISKEFVTTRSPSQIASHAQKYFDRNKDAVKKARKKRRSIHDTTIDNNGRLVILPVEKQNEIPSIERQQKEIPSHCTTLNVIPSIEQQNKISPLVTRSFHDQFNLVSHDSLNSVTMLITGSAGKPTQESHDIGDVGSSTISGIPKTTNDARVFCLSYAITSVLKQFYTGIIRCAGRFTVKVTVFL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1401 290 ProSiteProfiles SANT domain profile. 84 132 IPR017884 -
Tpr2g1401 290 Pfam Myb-like DNA-binding domain 81 128 IPR001005 -
Tpr2g1401 290 PANTHER TRANSCRIPTION FACTOR SRM1 9 192 - -
Tpr2g1401 290 PANTHER TRANSCRIPTION FACTOR KUA1 9 192 - -
Tpr2g1401 290 SUPERFAMILY Homeodomain-like 78 133 IPR009057 -
Tpr2g1401 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Tpr2g1401 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Tpr2g1401 290 MobiDBLite consensus disorder prediction 1 51 - -
Tpr2g1401 290 SMART sant 80 130 IPR001005 -
Tpr2g1401 290 Gene3D - 82 133 - -
Tpr2g1401 290 MobiDBLite consensus disorder prediction 1 85 - -
Tpr2g1401 290 CDD SANT 84 128 IPR001005 -
Tpr2g1401 290 MobiDBLite consensus disorder prediction 69 85 - -
Tpr2g1401 290 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1401 Tpr-Chr2 16380785 16388677 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g1401 Myb_DNA-binding 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1401 - - mtr:MTR_5g088060 157.147