Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1400 ATGGCAGCTTGTACTGTCTACTCAACACAATCTCTAAGAACAAACATCTCAATTCCAACATCATCATCAAAAACACATGTTGGATTTAATCAAAAACAAGTAGTCTTCTACACAAAAAGCAACAACAAAAGACTTAACAACACCAGCAGATATTTGATAACATGTAAAGCAAGTGATTCACAAACAATTGTGATTGGTTTAGCAGCTGATTCTGGCTGTGGAAAAAGCACTTTTATGAGAAGACTCACAAGTGTTTTTGGTGGAGCAGCAGAACCACCAAAAGGTGGTAATCCTGATTCAAACACACTTATCAGTGACACAACTACTGTTATATGTTTGGATGATTATCATTCTTTGGATAGAACTGGTAGAAAAGAGAAAGGTGTCACGGCACTTGATCCAAGAGCTAATGATTTTGATCTTATGTATGAACAAGTTAAAGCTATTAAAGATGGAATTTCTGTTCAAAAACCTATTTATAATCATGTTACTGGTCTTTTGGATCCTCCTGAGCTTATTAAACCACCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTATGACTCAAGAGTCAGAGACCTATTGGATTTCAGCATCTACTTAGACATTAGTAATGAGGTGAAATTTGCATGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGTATCAAGGCTAGTATTGAAGCAAGAAAGCCTGATTTTGAAGCTTATATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTACCAACTCAACTCATTCCTGATGATAATGAGGGAAAGATTTTAAGAGTGAGGTTGATCCAAAAAGAGGGTGTTAAGTACTTTAGCCCAGTTTACTTGTTTGATGAAGGTTCAACCATTTCATGGATACCATGTGGAAGGAAACTTACATGCTCTTACCCTGGCATTAAATTTTTCTATGGACCAGAATCTTACAAAGGAAATGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGATTAGATGAACTAATATATGTTGAGAGTCACTTAAGCAACTTATCTTCAAAATTCTATGGAGAAGTTACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATTTATTTGAGCAGATAGTAGCAAGCAGGGCTGAGACTCCAGTAGGAGCAACAAAAGCTTAA 1227 0.37 MAACTVYSTQSLRTNISIPTSSSKTHVGFNQKQVVFYTKSNNKRLNNTSRYLITCKASDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGISVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPESYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGATKA* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1400 408 PANTHER PHOSPHORIBULOKINASE 6 408 - -
Tpr2g1400 408 Gene3D - 59 293 IPR027417 -
Tpr2g1400 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tpr2g1400 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tpr2g1400 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tpr2g1400 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tpr2g1400 408 PANTHER URIDINE KINASE 6 408 - -
Tpr2g1400 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Tpr2g1400 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tpr2g1400 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 332 IPR027417 -
Tpr2g1400 408 CDD PRK 64 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1400 Tpr-Chr2 16357729 16361712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1400 116 290 PRT Gene Family AT3G27440 25.843 2.82e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1400 K00855 - gmx:100807126 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1400 2 16357729 16361712 Tpr2g1400 2 16357729 16361712 ECH