Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1398 ATGGGTAACGCACATGGACATCATCATCGCAAACACCGTTTTTCCGTTCCAAACAACACGGTTCCTCCTCCTACTCCACCTTATAAATACGGTTCTACTTCTCAGCTTCATAATCCACCAAACAACAACAACATGATTTCTTTGCCTTACGCCAACGCCGACATTACTCTCCGTTCCCTCGCCGCTCAGGCTGAAGGCTTTGGCCGCTTCGCAACCGGTGGACTTCATGGTTCTCTTTATCATGTCACATCACTCTTAGATGATGGACCGGGATCATTGCGTGACGCATGTCGCAAAAAAGAGCCTTTGTGGATTGTGTTTGAGGTTTCTGGTACAATTCAACTTTCGTCTTACTTGAGTGTGTCATCATACAAGACCATTGATGGAAGGGGCCAAAGGATTAAGCTGACTGGAAAGGGTTTTCGGCTGAAGGAATGTGAACATGTAATCATTTGTAATTTAGAGATCGAAGGGGGCAGAGGACCTGATGTTGATGCTATTCAGATTAAACCTAATTCAAAACATATATGGATAGATCGTTGCACTCTCAGTGATTTTGAAGATGGGCTCATTGATATCACTCGAGGAAGCACTGATATTACAATTTCAAGGTGTCACTTTCATCAGCATGACAAAACAATACTCATTGGATCAGATCCCAAACATGTTGATGATAGATGCATGAAGATCACCATACACCACTGTTTTTTCAATGGTACTCGACAAAGGCATCCTCGTGTTAGGTTCGCAAAAGTACATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTTGAATCCCAGATATTCTCTCAACATAATATCTATGAAGCGGGCCAGAAGAAGGTTGCTTTTAAGTATCTTCATGAGAAGGCAGCAGACAAGGAAGCTGAAGCAACTGGACACATAATTTCTGAAGGAGATATATTTTTAAACGGTGCTCAACCAGGGTTGATGACAGAGAATATTGGCATTAAGGTGTTTCATCCGAGTGAACACTATCTCACATGGACAGTGGGAGCTCCTACAGATGATCTAAAGCAAGTTCTTCATCACTATACCGGATGGCAATCTGTTGCGAGGCCAGCCGATCAAGCCGTTTGCGCAGAATAA 1131 0.4297 MGNAHGHHHRKHRFSVPNNTVPPPTPPYKYGSTSQLHNPPNNNNMISLPYANADITLRSLAAQAEGFGRFATGGLHGSLYHVTSLLDDGPGSLRDACRKKEPLWIVFEVSGTIQLSSYLSVSSYKTIDGRGQRIKLTGKGFRLKECEHVIICNLEIEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRGSTDITISRCHFHQHDKTILIGSDPKHVDDRCMKITIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLHEKAADKEAEATGHIISEGDIFLNGAQPGLMTENIGIKVFHPSEHYLTWTVGAPTDDLKQVLHHYTGWQSVARPADQAVCAE* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1398 376 MobiDBLite consensus disorder prediction 1 24 - -
Tpr2g1398 376 Gene3D - 50 342 IPR012334 -
Tpr2g1398 376 Pfam Pectate lyase 118 281 IPR002022 -
Tpr2g1398 376 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Tpr2g1398 376 PRINTS Pollen allergen Amb family signature 118 134 IPR018082 -
Tpr2g1398 376 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Tpr2g1398 376 PANTHER PECTATE LYASE 42 368 - -
Tpr2g1398 376 MobiDBLite consensus disorder prediction 1 15 - -
Tpr2g1398 376 PANTHER PECTATE LYASE 18-RELATED 42 368 IPR045032 GO:0030570
Tpr2g1398 376 SMART amb_all 90 288 IPR002022 -
Tpr2g1398 376 SUPERFAMILY Pectin lyase-like 63 369 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1398 Tpr-Chr2 16340593 16343852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1398 85 373 Polysaccharide Lyase AT3G55140 74.048 4.53e-164 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1398 K01728 - gmx:100814368 612.838