Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1394 ATGATGGAAAGTGGAGGGAGAGAAGGGTTTGATGGCGTGATGATGACGATGACAAGAGACCCGAAGCCGAGGTTAAGGTGGACGGCCGATCTTCATGACCGGTTTGTCGATGCAGTCACAAAGCTTGGCGGCCCTGATAAGGCAACTCCTAAGTCTGTTCTAAGGTTAATGGGATTAAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAACATGCTCAAAAACAAAATGAAGAACAGTACAAAGATAATAGATGTTCGTATGTAAATTTCAGTAACCATTCTACTGGGACTAATACCAGTTATGGAGGTGATAATGAAGGAGGAGAAATCCCAATAGGAGAAGCACTAAGGCAACAAATTGAAGTTCAAAAGAGATTGGAAGAACAACTTGAGGTACAAAAGAAATTGCAAATGAGAATAGAGGCTCAAGGGAAGTATTTACAAACAGTGTTAGAGAAAGCACAAATGACTAGTCTTTCTCAAGATGAACATGGCAATCTTGAAGCATCAAAAGCTCAATTAGCTGAATTCAATTCAGCTTTATCAAATTTCATGGAAAATATGAACAAAGATACTAAAGAAAACATAGTAGACATAAATGGATTTTATAATAAAAATTATAGCTCATCTTTCAATTATCAAGAAGTACTAGGGACAGAAGAAAATAAGGATCTAAAGCCTCAAATTGAAGGAGGGTCAGTACAATTAGACTTAAACATCAAAGGTGGCAATGAACTTTTATCTACTAATGAGGCTGAAATGGATTCAAAGATGGTTTCATATAGGGTATACCACTTTTGA 825 0.3661 MMESGGREGFDGVMMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQHAQKQNEEQYKDNRCSYVNFSNHSTGTNTSYGGDNEGGEIPIGEALRQQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQTVLEKAQMTSLSQDEHGNLEASKAQLAEFNSALSNFMENMNKDTKENIVDINGFYNKNYSSSFNYQEVLGTEENKDLKPQIEGGSVQLDLNIKGGNELLSTNEAEMDSKMVSYRVYHF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1394 274 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Tpr2g1394 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 259 IPR044848 GO:0003700
Tpr2g1394 274 Coils Coil 124 151 - -
Tpr2g1394 274 Gene3D - 21 79 - -
Tpr2g1394 274 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Tpr2g1394 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 259 - -
Tpr2g1394 274 Coils Coil 175 195 - -
Tpr2g1394 274 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Tpr2g1394 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
Tpr2g1394 274 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 77 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1394 Tpr-Chr2 16294512 16298186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1394 13 191 G2-like Transcription Factor Family AT3G24120 53.261 4.28e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr2g1394 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1394 - - gmx:100810146 416.001