Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1376 ATGGCTGTGAATCTGACACCAGGTGCGATTAAGACGATGTGTTTCACTTCGGAGGAATTGCAACCGGTTTTACAAGTTATCGATTTGAAGCTTGTTCAAGCGCAGCAGAATAGTACTACTGAAAGGTACCGATTAGTTCTATCTGATGGTTCGTTTTATCAACAAGGAATGCTCGCTACTCAGAAGAATAAACTGGTTCAAGATCAAATATTGCAGAAAGGTTCCGTTGTTAGACTCACTCAGTACGTTTGTAACGATGTTCAGAATCGCAAGATTATTATTATTGTTGATCTTGAGGTTATGCTGGAAAAATGTGAGTTGATTGGGACTCCTGTTTCGGTAAACAATGCTGCTGGTCAAGCAGGAAATGTACAACCAGCTGCTGGTCAATTAGGAAACAATGCTGGAAATTCACAGTATTCAAACAGTAATTCCCATGCAGGTGGCGTTAATGTTAGACCAAACGTGGCTGTGCCATCTATAGATCGTTCGAACGTGAATCCTTCTGCCAGCAGTGTTTATTCTAACAGTTCTGAACCTGCAAGATATGGTGCATCTAATGCTCCTCCATCTTATGCTAAACCTGAGCCTGGAGTCAGTTTGAATAGATCAGCACCAGTCAATGCGTCTTATGGTGAACAGAATACAAGTTTCCGCAGTCCACAATACCAGGCTTCAAATCCAGTGCAAAATTCTTTTGCTCGCCCTCCTCAGCCTATGAATCGACAGCCATCTCCAATGTACACCAACAGAGGCCCTACAGGAAGAAATGATGCTCCTCCAAGGATACTTCAAATATCTGCATTGAATCCATATCAGAATAACTGGACAATTAAAGCCAGAGTAACGACTAAAGGAGAACTTAGGCACTATAGCAATACCCGAGGTGATGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTTATGGTGGAGTAATACGGGCAACTTGCTTTAATGCTGTGGCAGATAAGTTCTATAATGAAATTGAAGTCGGTAAAGTCTATCTTGTTTCCAGGGGAAGTGTGAAGCCAGCTCAGAAGAATTTTAATCCCCTTCCTAATGAATATGAGATAACGCTTGATATGACATCAGTTATACAGCCATGCCTTGAAGATGATAACTCAATTCCAAAACAGATATTTAATTTTCGTTCCATTGGTGACGTTGAAAGTATGGAAAACAACAGCATTGTGGATTTGATTGCTGTGGTTACTTCTATCAGTCCCACAGCTTCAATCATTAGAAAAAATGGCACTGAAACACAGAAGAGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTTTATGGGGAAATTTTTGCAATAGCGAAGGACAAAGGCTGCAAAATATTTGTGACTCGGGGGAATTTCCAATTTTGTCTGTAAAGTCTGCCAGAGTAAATGATTTCAATGGGAAGTCTGTTGGGACCATAACCACCAGCCAATTAATTGTAGAACCTGATTTCCCAGAGGCTCTTACACTGAAAGAATGGTTTGATAAGGAAGGGAGGAATGTCCCAAGTCAATCTATTTCCAGAGAATCATCTAGTTTTGGTCAAAGTGAAGTGCGGAAGACTGTAAATCAAATTAAGGATGAAAATTTAGGGACTAAAGAGAAGCCTGACTGGATATCTATCTGTGCAAATATTGCATTCATTAAAGGTGAACCTTTTTGCTACACAGCTTGTCCTATCAAGATAGGAGATAGGCAATGTAACAAAAAGGTTACCAACAATGGAGATGGGAAATGGCGCTGTGACAGATGTGATCAGTCTTTTGATGACTGTGATTATAGGTACTTACTGCAACTGCAGATACAGGATCACACCGCTATAACATGGGTTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATTGGTATGCCTGCAAACGATTTGTATTTACTGAAATACGAAGAATCAGATGATGTAGCATCAGCAACAATCTTCCGCAAGGCTCTCTTCGCTAAATATGTGTTCAAGTTAAAAGTAAAGGAGGAGACATTTAATGACGAATCACGTGTTAAGTCAACAATTGTAAAAGCAGAGAAGGTAAACTTTGCATCTGATTCTCGATCTTGTCTGGATTTGATTGATAAACTTATGTCCGAGAAAGCAGAAGGTACCACTATTAACTCTGTGATCAATAAAACTGGACTGGGGAACTTTGAAACTGGACAAGTTATGCCACCCATATATAATCCTATAAAGAGCAACACTAATACGGGTAGAGATTATGGGACCCCAGCAAACCAAGTGGGTCAGTATGGAAACCAATATAACAGTTCTTTTGCTTCGTCAGGGGCTCCTGGTTCGTACATGTCATGTAGCACATGTGGAGGCACTGGGCATAGCTCTGCACAATGCCTAAATATTAGAAATCAATCTGGACAGTCTGCTGGAGGAGGGGCCTTTGCTAACAGGGTATCTGCTGGATCAGGCGGTGCTTCTGGTAATTGTTATAAATGCCAACAACCTGGACATTTTGCAAGAGATTGTCCTGGTATCGCTGCAGCACCTTCGGATCAGTATTTGCAGCGCCCAACTGCTGGATCAGGTGGTGGTTCTGGTGATTGCTATAAATGCCAACAACCTGGTCATTGGGCGAGAGATTGTCCTGGTAACGGTGCAGCACCTCAATCTTATGGAAACAGTAATGCAGGGCAAGGAAGATATGGTACTGCTCAAAATCAGCAGTATGGAGGACGATATTGA 2727 0.4144 MAVNLTPGAIKTMCFTSEELQPVLQVIDLKLVQAQQNSTTERYRLVLSDGSFYQQGMLATQKNKLVQDQILQKGSVVRLTQYVCNDVQNRKIIIIVDLEVMLEKCELIGTPVSVNNAAGQAGNVQPAAGQLGNNAGNSQYSNSNSHAGGVNVRPNVAVPSIDRSNVNPSASSVYSNSSEPARYGASNAPPSYAKPEPGVSLNRSAPVNASYGEQNTSFRSPQYQASNPVQNSFARPPQPMNRQPSPMYTNRGPTGRNDAPPRILQISALNPYQNNWTIKARVTTKGELRHYSNTRGDGKVFSFDLLDSYGGVIRATCFNAVADKFYNEIEVGKVYLVSRGSVKPAQKNFNPLPNEYEITLDMTSVIQPCLEDDNSIPKQIFNFRSIGDVESMENNSIVDLIAVVTSISPTASIIRKNGTETQKRSLQLKDMSGRSVELTLWGNFCNSEGQRLQNICDSGEFPILSVKSARVNDFNGKSVGTITTSQLIVEPDFPEALTLKEWFDKEGRNVPSQSISRESSSFGQSEVRKTVNQIKDENLGTKEKPDWISICANIAFIKGEPFCYTACPIKIGDRQCNKKVTNNGDGKWRCDRCDQSFDDCDYRYLLQLQIQDHTAITWVTAFQEGGEEIIGMPANDLYLLKYEESDDVASATIFRKALFAKYVFKLKVKEETFNDESRVKSTIVKAEKVNFASDSRSCLDLIDKLMSEKAEGTTINSVINKTGLGNFETGQVMPPIYNPIKSNTNTGRDYGTPANQVGQYGNQYNSSFASSGAPGSYMSCSTCGGTGHSSAQCLNIRNQSGQSAGGGAFANRVSAGSGGASGNCYKCQQPGHFARDCPGIAAAPSDQYLQRPTAGSGGGSGDCYKCQQPGHWARDCPGNGAAPQSYGNSNAGQGRYGTAQNQQYGGRY* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1376 908 Pfam Replication factor-A C terminal domain 547 696 IPR013955 -
Tpr2g1376 908 Gene3D - 262 369 IPR012340 -
Tpr2g1376 908 CDD RPA1_DBD_A 265 368 - -
Tpr2g1376 908 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 213 704 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr2g1376 908 Pfam Replication protein A OB domain 386 489 IPR031657 -
Tpr2g1376 908 Pfam Zinc knuckle 863 877 IPR001878 GO:0003676|GO:0008270
Tpr2g1376 908 Pfam Zinc knuckle 823 838 IPR001878 GO:0003676|GO:0008270
Tpr2g1376 908 PANTHER REPLICATION PROTEIN A SUBUNIT 3 743 - -
Tpr2g1376 908 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Tpr2g1376 908 SUPERFAMILY Nucleic acid-binding proteins 263 376 IPR012340 -
Tpr2g1376 908 SUPERFAMILY Nucleic acid-binding proteins 528 706 IPR012340 -
Tpr2g1376 908 Gene3D - 375 513 IPR012340 -
Tpr2g1376 908 Gene3D - 514 706 IPR012340 -
Tpr2g1376 908 CDD RPA1_DBD_C 531 704 IPR013955 -
Tpr2g1376 908 CDD RPA1_DBD_B 397 504 - -
Tpr2g1376 908 ProSiteProfiles Zinc finger CCHC-type profile. 824 838 IPR001878 GO:0003676|GO:0008270
Tpr2g1376 908 Gene3D - 855 886 - -
Tpr2g1376 908 CDD RPA1N 8 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tpr2g1376 908 SUPERFAMILY Retrovirus zinc finger-like domains 815 879 IPR036875 GO:0003676|GO:0008270
Tpr2g1376 908 Pfam OB-fold nucleic acid binding domain 276 360 IPR004365 GO:0003676
Tpr2g1376 908 SUPERFAMILY Nucleic acid-binding proteins 381 510 IPR012340 -
Tpr2g1376 908 MobiDBLite consensus disorder prediction 887 908 - -
Tpr2g1376 908 MobiDBLite consensus disorder prediction 163 184 - -
Tpr2g1376 908 PANTHER REPLICATION FACTOR A 1, RFA1 3 743 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr2g1376 908 MobiDBLite consensus disorder prediction 163 192 - -
Tpr2g1376 908 Gene3D - 3 116 IPR012340 -
Tpr2g1376 908 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tpr2g1376 908 ProSiteProfiles Zinc finger CCHC-type profile. 863 877 IPR001878 GO:0003676|GO:0008270
Tpr2g1376 908 SMART c2hcfinal6 823 839 IPR001878 GO:0003676|GO:0008270
Tpr2g1376 908 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Tpr2g1376 908 SMART c2hcfinal6 862 878 IPR001878 GO:0003676|GO:0008270
Tpr2g1376 908 Gene3D - 777 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1376 Tpr-Chr2 15994075 15997834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1376 1 807 Core DNA Replication Machinery Family AT5G45400 50.000 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1376 K07466 - gmx:100778597 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1376 2 15994075 15997834 Tpr2g1376 2 15994075 15997834 ECH