Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1365 ATGGGTTCAGCAGCATTTGTTGTCTCAATCTATCATGTCATAGCCATTTGGTTTTGCCATCAAAGAACAACCACCACAATTCAAAATTCACCGCGGCACGGTGCTGCGAGGCTCGACGAAAGCACGTCCGTATCAGTGGCAGACTTAATTCCAACACATAAGTATCACAACAGAGGTAAAGTTGACCAAGTTTCAGATGATGAAGGTGGCACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAAGAGTTGAAAAGTATGCCTGAGTGCTTGCATTCTTTTCATGTACCGTGTATTGACATGTGGCTTAATTCGCATTCGAGTTGCCCCATTTGTCGCGCTAGTGCCGCCCCTTCGCCGGCAATGAATATTGAACATCAACACATGATTGATATGAGACATATGGCTCCAATTGCTATCATGTAA 429 0.4522 MGSAAFVVSIYHVIAIWFCHQRTTTTIQNSPRHGAARLDESTSVSVADLIPTHKYHNRGKVDQVSDDEGGTCAVCLGDFEEGEELKSMPECLHSFHVPCIDMWLNSHSSCPICRASAAPSPAMNIEHQHMIDMRHMAPIAIM* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1365 142 CDD RING-H2_PA-TM-RING 71 114 - -
Tpr2g1365 142 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 135 IPR044675 -
Tpr2g1365 142 SMART ring_2 72 113 IPR001841 -
Tpr2g1365 142 SUPERFAMILY RING/U-box 61 119 - -
Tpr2g1365 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 121 IPR013083 -
Tpr2g1365 142 Pfam Ring finger domain 71 114 IPR001841 -
Tpr2g1365 142 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Tpr2g1365 142 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1365 Tpr-Chr2 15923765 15924203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1365 6 128 C3H Transcription Factor Family AT4G10150 31.343 5.02e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1365 - - aip:107639941 165.236